Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00154 ATGTCGAGTCGGAGCGGGAGGGAGCGGATTAGGAGGGATTACCCTCCAAGAAATGAAGATAGGGACAGTGGTGCTATGGGGCGAGGCAACAGCAGTAGTGGCAAGAATCCCCCATCCAGGCACCTCTGGGTTGGGAACCTGTCTCACAACATTGTGGAGGACGACCTTGCTCATCATTTCTCACAGTTCGGGCCGCTGGAGACCGTCGCCTTCCAGCCCGGCCGCTGCTACGCCTTCGTTAACTTCAAGAGGGACCAGGATGCTATTGATGCCATCAGAGCACTGCAAAGTTTTCCTCTTGCTGGCAACACGCTTAGGATCGAGTTTGCGAAGGCGGATAAGCCAGTGACAACAGCAAGAAATGAACATTACTCACGGGATGAACGAAGCTCCTCATTTAGGGGATCACCTCCCTCCCAAAGGGACTTTAGAGGACGCCATGGTAGCCCCCCTCAACCGGTTTATTCGGAGAAATCCAAACTGAGTGATAAAAGTCCAGAACCCAGTGAGATATTGTGGATTGGATTCCCTTCTTCTCTGAAGGTGGATGAATCCATTTTAAGAAAGTCATTTTCTCCATTTGGTGAGATAGTGAAGATTACTGCATTTCCAGGTCGTACTTATGCCTTTGTTCGCTTTCGGAGTATTGCGTCAGCACGCAGAGCAAAAGATACTCTGAACGGAAAATTATTTGGAAATCCCCGTGTACATATTTGTTTTGCCAAGAATGAAGCAGGTCCATCAAGTAGTGGGAGGAGCTCATATAATGCTCCACATTCTCCACTTTACAGGTCCAGTGGCCGTGAAGGATCAGCTGAGGACCTCAGGCTGGAGAGGAGCTTCAGGGAAGACCATAACATTAGTTCACCAAACTTCCTCGCAAATTGGGATCCCGGTGATTCTGATGCTTATGATTTTAATAGGGGCTCATCATGGGTTAGTGGAAGAAACACATATGAGAAAAGAAAAGTTGGCGAGAAAGGAACTCCACCGGGATTTGGATCATCACATGAAATTCATGAATATATGAGTGTTCCTTCTAGAGAAAGACATGGATACCTGGGGGATTTGCCACAGAGGTTTCCTGAAAAGGGTGCATTCTTTGAAGATTTCCGGACGTTGCCAGAAGATGTTTACTATCTACGCGAGGCGAAAAAGCGGAAGACCAGTTCTCCTCCTACGGACAGAGAGCTTCCGGAGTATCCTTTCGCTGAGTTAGAAAGACAGAAAGGTGTTTTCCCACGGTTATCTGGTTTCTGCCAACACGAATCTTTTAATAACGACGATGGAAATGTTGCTTACAGACAGACCCTTGATTACCCACCAAATTCACCTATGGCTTCTTTAGATAGACATGAAGGCTGGAAAACTTATGATAGTTTTCAAATGGGTCATGGTGCTCTGCAATCGGATTTTGTATATAAGAAAAGATTTTCATCGGAACCTGATAATTCGTCTTTAACTGAGTGGAACTGGGAAGGAACCATTGCTAAAGGTGGAACCCCTGTTTGTCGCGCACGCTGCTTCCCAGTGGGGAAAGCCCTGGATATGATGTTACCGGAATTCTTGGATTGCACTGCCAGAACTGGTTTAGACATGCTCTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCTGGAAGTGATGCTGATATTGAATTCTACAATGAATTTATGCATTATCTGGAGGAAAAGCAGCGTGCTGCAGTTGCTAAGTTGGATGATAAGACCACCTTATTTCTTGTACCTCCATCAGATTTCTCAGAGAAAGTGTTGAAGGTACCTGGGAAATTGAGCATATCAGGAGTTATTCTTAGACTGGAGATTCCTGGTTTAAATGATGGTCCTTTACATGTGCAAAGAGAAACAAACAATGAAAAACTGTTGCATTATAACGGGAATTCATTGTATCCAAAGCCATCATTCCCTTCAGTGCGTATTCATTCCCCATCTGTTTCAGAATTCGGTAGTTCTGGAATGAGCAATACTTCTTTCCTTGGTAATAAAATTGCTCCATCAGTTCCTGCGGTTGGCTTGTCTGAACCACACGGTGAAAGAAGCCTCGACTATCCACCTGTCCAGCAGCAGAACCCAAACTGGTTTTCTCACAATATGCAGAATTCAATCTCAACCCGAATACCACCGCAACTACCAAGTGGGTTTATCAAACCTACTTCTGAGGATGGCCGTGCCATGATTCCAAGGGCAGAGGCAGATGCAAACTCAAATCAACACAGCAGTGGAATATCTGGTATTCCTAACTGTAAGTCATCTCAGCTGGATTTGAGACCTGTGAATCCTTTGTCTGTGCCTGTGGGATCCCTGCAACCGGAACAGCTTGCACAACTAGCTGCATCTCTTCTTGAACAGCAGAGGCAATCAGGAAACTCTGCGAATGCATCTGCATCGAACGATCCTAGGCAGACCAACAGAGCTAGCATGCCCGACAGCTCATCCAGGTCATCCCAAAATTATGCAGTAGAAAACTTGGTGAATCCTGAAGTCTCCACATCTCAATTTGGTCAAGCTCTACCGTTGCAAAAGCAGCAACAGGGGTCAAATGTGCCTCCATCGTCACATACGATTCAAAGAGAACCTCAAAGAGGGGCCAATGGGAATCAACAGGTGATAGATAGTAGCTTGCAGGAAGAAGCCGAAGCAGATCCGCAGAAACGTCTACAAGCAACATTACAGCTGGCTGCTGTTCTTCTTCAGCAAATCCAGCAGGGAAAAGGAAGCTAA 2757 0.4596 MSSRSGRERIRRDYPPRNEDRDSGAMGRGNSSSGKNPPSRHLWVGNLSHNIVEDDLAHHFSQFGPLETVAFQPGRCYAFVNFKRDQDAIDAIRALQSFPLAGNTLRIEFAKADKPVTTARNEHYSRDERSSSFRGSPPSQRDFRGRHGSPPQPVYSEKSKLSDKSPEPSEILWIGFPSSLKVDESILRKSFSPFGEIVKITAFPGRTYAFVRFRSIASARRAKDTLNGKLFGNPRVHICFAKNEAGPSSSGRSSYNAPHSPLYRSSGREGSAEDLRLERSFREDHNISSPNFLANWDPGDSDAYDFNRGSSWVSGRNTYEKRKVGEKGTPPGFGSSHEIHEYMSVPSRERHGYLGDLPQRFPEKGAFFEDFRTLPEDVYYLREAKKRKTSSPPTDRELPEYPFAELERQKGVFPRLSGFCQHESFNNDDGNVAYRQTLDYPPNSPMASLDRHEGWKTYDSFQMGHGALQSDFVYKKRFSSEPDNSSLTEWNWEGTIAKGGTPVCRARCFPVGKALDMMLPEFLDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLEIPGLNDGPLHVQRETNNEKLLHYNGNSLYPKPSFPSVRIHSPSVSEFGSSGMSNTSFLGNKIAPSVPAVGLSEPHGERSLDYPPVQQQNPNWFSHNMQNSISTRIPPQLPSGFIKPTSEDGRAMIPRAEADANSNQHSSGISGIPNCKSSQLDLRPVNPLSVPVGSLQPEQLAQLAASLLEQQRQSGNSANASASNDPRQTNRASMPDSSSRSSQNYAVENLVNPEVSTSQFGQALPLQKQQQGSNVPPSSHTIQREPQRGANGNQQVIDSSLQEEAEADPQKRLQATLQLAAVLLQQIQQGKGS 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00154 918 MobiDBLite consensus disorder prediction 794 828 - -
Arst4g00154 918 MobiDBLite consensus disorder prediction 1 42 - -
Arst4g00154 918 SUPERFAMILY RNA-binding domain, RBD 29 120 IPR035979 GO:0003676
Arst4g00154 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 243 IPR000504 GO:0003723
Arst4g00154 918 Pfam SPOC domain 486 600 IPR012921 -
Arst4g00154 918 MobiDBLite consensus disorder prediction 25 39 - -
Arst4g00154 918 MobiDBLite consensus disorder prediction 851 886 - -
Arst4g00154 918 CDD SPOC_FPA-like 492 610 - -
Arst4g00154 918 CDD RRM_SF 179 238 - -
Arst4g00154 918 MobiDBLite consensus disorder prediction 1 24 - -
Arst4g00154 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 112 IPR000504 GO:0003723
Arst4g00154 918 MobiDBLite consensus disorder prediction 851 894 - -
Arst4g00154 918 MobiDBLite consensus disorder prediction 246 261 - -
Arst4g00154 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 235 IPR000504 GO:0003723
Arst4g00154 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 106 IPR000504 GO:0003723
Arst4g00154 918 MobiDBLite consensus disorder prediction 117 166 - -
Arst4g00154 918 Gene3D - 10 150 IPR012677 -
Arst4g00154 918 SUPERFAMILY RNA-binding domain, RBD 181 270 IPR035979 GO:0003676
Arst4g00154 918 CDD RRM_SF 42 108 - -
Arst4g00154 918 SMART rrm1_1 41 108 IPR000504 GO:0003723
Arst4g00154 918 SMART rrm1_1 171 239 IPR000504 GO:0003723
Arst4g00154 918 PANTHER RNA RECOGNITION MOTIF-CONTAINING 27 912 - -
Arst4g00154 918 Gene3D - 153 250 IPR012677 -
Arst4g00154 918 MobiDBLite consensus disorder prediction 744 765 - -
Arst4g00154 918 MobiDBLite consensus disorder prediction 245 270 - -
Arst4g00154 918 FunFam RNA recognition motif (RRM)-containing protein 156 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00154 Arst-Chr4 1098016 1107335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00154 42 306 Eukaryotic Initiation Factors Gene Family AT4G34110 23.466 3.16e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00154 - - gmx:100811668 1142.49