Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00088 ATGGCCAAATTGAAGGTTCTGAGGCTGCTTTTCAATTCAGGAAGTAAGAAGCCTGTAAGTAAGATGAATAGGAGTCCAAACTCTAACATGCCAAAAGGCGATTCGAAAATATCCGAATCAAATGCTGGAAAATTGATCTCCACTAACCTTAAGTCCTTCAGCTTCAATGATCTAAAGGTGGCCACTAAGAACTTCCGGCGAGAAAATTTAATTGGAGAGGGAGGGTTCGGGCGTGTGTTCAAGGGATGGATTGATGGGAACAACTATGCTCCAACGAAACCGGGGAGTGGGATTGTAGTGGCCATTAAGAGTCTTAAGCCAGAAAGCTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTCAGTTATCTCGGGCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTATTGCTTGGAGGGTAAAAACAGACTTCTTGTTTATGAGTTTATGCAGAAAGGAAGCTTGGAGAATCATTTATTCAAAAAAGGTGTTCAACCTATACCCTGGGCCACGCGGATCAATATTGCAGTTGGTGTTGCAAGAGGACTATCATTTTTACATTCCTTGGATGCGAATGTCATATTTCGTGATTTAAAGGCTTCCAATATCCTACTTGATTCAGATTTTAATGCAAAACTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACTGGAGATAATACTCATGTTTCAACCAGAGTTATTGGAACTCAAGGTTATGCTGCACCTGAATATGTTGCTACAGGTCATTTGACCCCAAGAAGCGATGTGTACAGCTTTGGCGTTGTCTTGTTAGAGTTATTAACAGGGAGGCGTGCACTAGAAGATGATAGGCCTGGATTTTCAGAAGAAACTCTTGTGGATTGGGCAAGGCCCTTCCTGAGTGATAACAGAAGAGTACTGAGAATCATGGATACTCGGTTGGGTGGTCAATATTCCAAGAAAGGAGCACAAGCTATGGCCTCACTCGCCTTGCAATGCCTAAACACTGATCCAAAACTTAGACCACCCATGGTAGATGCTCTTGCAACACTAGAAGGACTCAATTCGTCGAATTCAATGCCGAGGACGCCACGATTAGGTACAGAGAGTAATTCAGCCAACCACTCTGGTTATTCGCACAGGTGA 1131 0.4324 MAKLKVLRLLFNSGSKKPVSKMNRSPNSNMPKGDSKISESNAGKLISTNLKSFSFNDLKVATKNFRRENLIGEGGFGRVFKGWIDGNNYAPTKPGSGIVVAIKSLKPESFQGHKEWLAEVSYLGQLHHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFKKGVQPIPWATRINIAVGVARGLSFLHSLDANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRALEDDRPGFSEETLVDWARPFLSDNRRVLRIMDTRLGGQYSKKGAQAMASLALQCLNTDPKLRPPMVDALATLEGLNSSNSMPRTPRLGTESNSANHSGYSHR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00088 376 ProSiteProfiles Protein kinase domain profile. 65 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst4g00088 376 Gene3D Transferase(Phosphotransferase) domain 1 151 365 - -
Arst4g00088 376 MobiDBLite consensus disorder prediction 347 376 - -
Arst4g00088 376 MobiDBLite consensus disorder prediction 16 39 - -
Arst4g00088 376 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 151 360 - -
Arst4g00088 376 SUPERFAMILY Protein kinase-like (PK-like) 44 355 IPR011009 -
Arst4g00088 376 Gene3D Phosphorylase Kinase; domain 1 39 150 - -
Arst4g00088 376 Pfam Protein tyrosine and serine/threonine kinase 68 342 IPR001245 GO:0004672|GO:0006468
Arst4g00088 376 ProSitePatterns Protein kinases ATP-binding region signature. 71 103 IPR017441 GO:0005524
Arst4g00088 376 PANTHER OS01G0588500 PROTEIN-RELATED 33 349 - -
Arst4g00088 376 FunFam Serine/threonine-protein kinase BIK1 32 150 - -
Arst4g00088 376 CDD STKc_IRAK 71 349 - -
Arst4g00088 376 SMART serkin_6 65 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00088 Arst-Chr4 551202 555006 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00088 24 346 Glycoside Hydrolase AT3G07070 48.795 1.25e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Arst4g00088 PK_Tyr_Ser-Thr 8.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00088 - - gmx:100800654 599.356