Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00087 ATGAATAGGAGTCCAAACTCTAACATGCCAAAAGGCGATTCGAAAATATCCGAATCAAATGCTGGAAAATTGATCTCCACTAACCTTAAGTCCTTCAGCTTCAATGATCTAAAGGTGGCCACTAAGAACTTCCGGCGAGAAAATTTAATTGGAGAGGGAGGGTTCGGGCGTGTGTTCAAGGGATGGATTGATGGGAACAACTATGCTCCAACGAAACCGGGGAGTGGGATTGTAGTGGCCATTAAGAGTCTTAAGCCAGAAAGCTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTCAGTTATCTCGGGCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTATTGCTTGGAGGGTAAAAACAGACTTCTTGTTTATGAGTTTATGCAGAAAGGAAGCTTGGAGAATCATTTATTCAAAAAAGGTGTTCAACCTATACCCTGGGCCACGCGGATCAATATTGCAGTTGGTGTTGCAAGAGGACTATCATTTTTACATTCCTTGGATGCGAATGTCATATTTCGTGATTTAAAGGCTTCCAATATCCTACTTGATTCAGATTTTAATGCAAAACTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACTGGAGATAATACTCATGTTTCAACCAGAGTTATTGGAACTCAAGGTTATGCTGCACCTGAATATGTTGCTACAGGTCATTTGACCCCAAGAAGCGATGTGTACAGCTTTGGCGTTGTCTTGTTAGAGTTATTAACAGGGAGGCGTGCACTAGAAGATGATAGGCCTGGATTTTCAGAAGAAACTCTTGTGGATTGGGCAAGGCCCTTCCTGAGTGATAACAGAAGAGTACTGAGAATCATGGATACTCGGTTGGGTGGTCAATATTCCAAGAAAGGAGCACAAGCTATGGCCTCACTCGCCTTGCAATGCCTAAACACTGATCCAAAACTTAGACCACCCATGGTAGATGCTCTTGCAACACTAGAAGGACTCAATTCGTCGAATTCAATGCCGAGGACGCCACGATTAGGTACAGAGAGTAATTCAGCCAACCACTCTGGTTATTCGCACAGGTGA 1068 0.4335 MNRSPNSNMPKGDSKISESNAGKLISTNLKSFSFNDLKVATKNFRRENLIGEGGFGRVFKGWIDGNNYAPTKPGSGIVVAIKSLKPESFQGHKEWLAEVSYLGQLHHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFKKGVQPIPWATRINIAVGVARGLSFLHSLDANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRALEDDRPGFSEETLVDWARPFLSDNRRVLRIMDTRLGGQYSKKGAQAMASLALQCLNTDPKLRPPMVDALATLEGLNSSNSMPRTPRLGTESNSANHSGYSHR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00087 355 ProSitePatterns Protein kinases ATP-binding region signature. 50 82 IPR017441 GO:0005524
Arst4g00087 355 Gene3D Phosphorylase Kinase; domain 1 18 129 - -
Arst4g00087 355 Pfam Protein tyrosine and serine/threonine kinase 47 321 IPR001245 GO:0004672|GO:0006468
Arst4g00087 355 FunFam Serine/threonine-protein kinase BIK1 11 129 - -
Arst4g00087 355 ProSiteProfiles Protein kinase domain profile. 44 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst4g00087 355 CDD STKc_IRAK 50 328 - -
Arst4g00087 355 SUPERFAMILY Protein kinase-like (PK-like) 23 334 IPR011009 -
Arst4g00087 355 PANTHER OS01G0588500 PROTEIN-RELATED 20 328 - -
Arst4g00087 355 Gene3D Transferase(Phosphotransferase) domain 1 130 344 - -
Arst4g00087 355 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 130 339 - -
Arst4g00087 355 MobiDBLite consensus disorder prediction 326 355 - -
Arst4g00087 355 SMART serkin_6 44 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00087 Arst-Chr4 551202 555089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00087 3 325 Glycoside Hydrolase AT3G07070 48.795 6.08e-103 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Arst4g00087 PK_Tyr_Ser-Thr 7.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00087 - - gmx:102664409 587.8