LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g00038	ATGGCTATTGGCAAAGAAACGATGCAACAACAACACAAGAAGGAGGAGGAGGAATTCATCTTCAAGTCCAGCCTTCCAGACATCTACATCCCCAACCACCTTCCCCTCCATTCCTACATCTTCCAGAACCTTCCGGACTTCGCCACGCGTCCCTGCCTCATCAACGCCCCAACCGGACAAGTTTTCACCTACTCCGACGTCGACCTCAAGGCCAGAAGAGTCGCCTCAGGCCTCCACAAACACGGAATCCGCCAAGGTGACGTCATCATGATCCTGCTCCCAAACTGCCCTCAATTCGTCTTCTCCTTCCTAGGCGCATCGTTCCGCGGCGCCATCGCCACCGCCGCCAACCCGTTCTTCACGGCCGCCGAGATAGCCAAGCAGGCCAAGGCCTCCAACGCCAGGCTGCTGGTAACGCAGTCCAGTTACTACGACAAGGTGAAGGACCTCCACGGCCACCTCAGCCTGGTGTTCGTGGACACTCCCCCGGAGGGGCACCTGCATTTCTCGGAGCTGGAAGAGGCCGACGAGGAAGACATCCCGGAGGTGAAGATCAGCCCGGAGGACGTGGTGGCGCTGCCGTACTCGTCGGGAACAACGGGACTGCCGAAAGGTGTGATGCTGAGTCACAGGGGGTTGGTGACGAGCGTGGGGCAGCAAGTGGACGGAGAGAACCCAAACCTTTACTATCACAGCGAGGATGTGATCATGTGCGTGCTCCCCATGTTCCACATATACTCCCTCAACTCCGTCCTGCTCTGCGGCCTCAGGGCCAAGGCTGCCATCGTCTTGATGCCCAAATTCGAGATCACTGCCTTCCTCGCCTTGGTGCAGAAGCATCGGGTCACCATATGCCCCGTCGTGCCTCCCATCATTCTCGCCATTGCAAAGTGCCCGGATCTCCACAACTACGACCTTTCTTCCATCCGAGTCCTTAAATCCGGCGGCGCTCCCCTCGCCAAGGACCTTGAAGACACCGTCCGCCTCAAATTCCCCAACGCCAAGCTTGGGCAGGGATATGGGATGACAGAGGCTGGTCCAGTGTTAACGATGTGCTTAACATTCGCCAAAGAAGCCATAGATGGAAAACCAGGTGCATGTGGCACCGTCGTCAGAAACGCTGAGTTGAAGATTGTTGATCCTGAAACCGAAAAATCTCTCCCGAGAAATCAACCGGGTGAAATTTGTATTAGGGGCCACCAGATCATGAAAGGTTATCTAAACGATCCAGAGGCAACAGAGAGAACAATTGACAAGGAAGGGTGGTTGCACACGGGTGACATTTCTGATGTTGCTGTTGTCCCGATGAAAGATGAAGCGGCCGGTGAGGTGCCAGTTGCATTTGTCGTGAGAGCAAATGGTCACAGTGACACAACTGAGGATGAGATTAAGCAATTCGTTTCCAAACAGGTGGTGTTTTACAAGAGAATTAACCGAGTTTTCTTCGTTGATGCCATTCCCAAGTCACCCTCCGGCAAAATATTACGAAAGGATCTAAGGGCAAGGCTCGCACTACCTCTTCCAAATTGA	1530	0.5438	MAIGKETMQQQHKKEEEEFIFKSSLPDIYIPNHLPLHSYIFQNLPDFATRPCLINAPTGQVFTYSDVDLKARRVASGLHKHGIRQGDVIMILLPNCPQFVFSFLGASFRGAIATAANPFFTAAEIAKQAKASNARLLVTQSSYYDKVKDLHGHLSLVFVDTPPEGHLHFSELEEADEEDIPEVKISPEDVVALPYSSGTTGLPKGVMLSHRGLVTSVGQQVDGENPNLYYHSEDVIMCVLPMFHIYSLNSVLLCGLRAKAAIVLMPKFEITAFLALVQKHRVTICPVVPPIILAIAKCPDLHNYDLSSIRVLKSGGAPLAKDLEDTVRLKFPNAKLGQGYGMTEAGPVLTMCLTFAKEAIDGKPGACGTVVRNAELKIVDPETEKSLPRNQPGEICIRGHQIMKGYLNDPEATERTIDKEGWLHTGDIXSDVAVVPMKDEAAGEVPVAFVVRANGHSDTTEDEIKQFVSKQVVFYKRINRVFFVDAIPKSPSGKILRKDLRARLALPLPN	510

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g00038	510	Gene3D	-	427	482	IPR045851	-
	Arst4g00038	510	Gene3D	-	13	426	IPR042099	-
	Arst4g00038	510	FunFam	Long-chain-fatty-acid--CoA ligase FadD	22	431	-	-
	Arst4g00038	510	CDD	4CL	30	500	-	-
	Arst4g00038	510	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	430	502	-	-
	Arst4g00038	510	Pfam	AMP-binding enzyme C-terminal domain	430	494	IPR025110	-
	Arst4g00038	510	Pfam	AMP-binding enzyme	49	428	IPR000873	-
	Arst4g00038	510	SUPERFAMILY	Acetyl-CoA synthetase-like	22	504	-	-
	Arst4g00038	510	ProSitePatterns	Putative AMP-binding domain signature.	193	204	IPR020845	-

Showing 1 to 9 of 9 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g00038	Arst-Chr4	258182	261096	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst4g00038	6	472	Monolignol Biosynthesis Gene Families	AT1G51680	62.162	0.0	642

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst4g00038	K01904		-	gmx:100819192	758.444

Showing 1 to 1 of 1 entries