Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00033 ATGAAACTCACTGTTAAGACTTTGAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCATCCGACACTATTATGGCTGTCAAGAAGAATATAGAAGATGTGCAAGGCAAAGATAATTACCCATGTGGACAACAGTTGCTTATTCACAATGGCAAGGTTTTGAAAGATGAAACAACATTAGCAGAGAACAAGGTCTCTGAGGATGGTTTTCTTGTTGTTATGCTTAGCAAGGTAGTTTATTCCTTCATGAAAACTTTTTCAAATTATAACACCCTTCCTTCCTCAAAACCTGCCAGCAATCCACCTGCAGCTGTATCAACCTCAAATTCCACGCCTGCTCCTGAACCTCCTGCACAAACTCAGGCTGCGAATAACAGTACATCTGGCCCAGCTGTCACAACTACAAATACAAACGTGTCTGCAGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGGTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGAGGTGGCAACTGGGACAGAGATACAGTTACTCGTGCTCTTCGGGCAGCTTACAATAATCCAGAGCGTGCTATAGACTATTTGTACTCTGGTATCCCCGAAGCAGCAGAAGTTGCTGTACCAGTTCCTCAATTCCCAGGTAGTCAGACAACTGAAACAGCTGGGGTCACTGCTGGAGCAGTTCCTGGACTACCTAACTCATCTCCCTTAAATATGTTTCCACAGGAGACAATTTCTGGTGCTGGTCCTGGACTAGGATCTCTTGACTTCCTCAGAAACAATCCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCAAATCCACAAATTTTACAGCCTGTACTTCAAGAACTTGGAAAGCAGAATCCCAATCTTTTAAGACTCATTCAAGAACATCATGCTGAGTTTCTACAGTTGATAAATGAACCTGTTGAGGGATCTGAAGGTGATATATTTGACCAGCCTGAGCAGGACATGCCTCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGCAAGGCTTGAGGCATTGGGATTTGATAGAGCCTCGGTCATAGAGGCGTTTTTGGCATGTGACCGGGATGAACAATTGGCAGCGAATTACTTATTGGAGAATGCTGGAGATTTTGAGGATTAA 1140 0.436 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKVVYSFMKTFSNYNTLPSSKPASNPPAAVSTSNSTPAPEPPAQTQAANNSTSGPAVTTTNTNVSADTYGQAASNLVGGSNLEQTIQQIMDMGGGNWDRDTVTRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPQFPGSQTTETAGVTAGAVPGLPNSSPLNMFPQETISGAGPGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPNLLRLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIARLEALGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00033 379 Gene3D - 326 374 - -
Arst4g00033 379 SMART ubq_7 1 75 IPR000626 GO:0005515
Arst4g00033 379 Pfam UBA/TS-N domain 156 194 IPR015940 -
Arst4g00033 379 Pfam UBA/TS-N domain 335 370 IPR015940 -
Arst4g00033 379 SMART uba_6 335 372 IPR015940 -
Arst4g00033 379 SMART uba_6 156 196 IPR015940 -
Arst4g00033 379 CDD UBA1_Rad23_plant 150 199 - -
Arst4g00033 379 MobiDBLite consensus disorder prediction 90 136 - -
Arst4g00033 379 FunFam UV excision repair protein RAD23 homolog 326 374 - -
Arst4g00033 379 Gene3D - 149 199 - -
Arst4g00033 379 FunFam UV excision repair protein RAD23 1 79 - -
Arst4g00033 379 SUPERFAMILY UBA-like 152 204 IPR009060 GO:0005515
Arst4g00033 379 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 333 373 IPR015940 -
Arst4g00033 379 CDD Ubl_Rad23 1 74 - -
Arst4g00033 379 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Arst4g00033 379 FunFam UV excision repair protein RAD23 B 244 310 - -
Arst4g00033 379 Gene3D - 1 77 - -
Arst4g00033 379 SUPERFAMILY XPC-binding domain 251 317 IPR036353 GO:0003684|GO:0006289|GO:0043161
Arst4g00033 379 FunFam UV excision repair protein RAD23 homolog 149 199 - -
Arst4g00033 379 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 368 - -
Arst4g00033 379 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Arst4g00033 379 SUPERFAMILY UBA-like 314 376 IPR009060 GO:0005515
Arst4g00033 379 PRINTS DNA repair protein Rad23 signature 361 376 IPR004806 GO:0006289
Arst4g00033 379 PRINTS DNA repair protein Rad23 signature 280 302 IPR004806 GO:0006289
Arst4g00033 379 PRINTS DNA repair protein Rad23 signature 329 345 IPR004806 GO:0006289
Arst4g00033 379 PRINTS DNA repair protein Rad23 signature 346 360 IPR004806 GO:0006289
Arst4g00033 379 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 154 197 IPR015940 -
Arst4g00033 379 Pfam XPC-binding domain 254 309 IPR015360 GO:0003684|GO:0006289|GO:0043161
Arst4g00033 379 SMART CBM 252 295 IPR006636 -
Arst4g00033 379 NCBIfam UV excision repair protein Rad23 1 378 IPR004806 GO:0006289
Arst4g00033 379 Gene3D - 244 310 IPR036353 GO:0003684|GO:0006289|GO:0043161
Arst4g00033 379 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00033 Arst-Chr4 226165 230577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00033 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.99e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00033 K10839 - gmx:100819019 613.609