Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g06219 ATGAAGGAGTCTGTAAACCATTCTTATCCTGGTCCAACCAAGATTCCATCAGAAAATACACCTAAAGAAGTGCAACAAGGTGCATGGGAGGATTTATCTAGATCTGATCTATACCATGTTTCATCTCATACTGGCTTCTTTTCTAGGTCATTGCCTGTTCCGTTACATGAAAAGTTGAACTTAAGCAGTGCTGATGGCTTTAAAAAGTCCCATCAAGATGTAGATGGGAATGGTTTACTTGAGGATGCTGATACTTGTGTGATAGGAACCATGCTTCCAGATGATGAGGAGGACCTTTTAGCTGATTTTGACCTAAGTGGTTTGCCAAACTCTCTTGAGGATTTGGAGGAGTATGATGTTTTTGGTAGTGGTGGAGGTATGGAACTGGAAGCTGATCCTCAGGAAAGTCTTAATGTGGGTGTGTCAAAATTAAGCTTCTCTGATGGTCATGCTGCCAATGGTTTGCCCTATAATTCTTTTCTTAATGGTGTGGGGATTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGGACATTATTTGTTCGAAATATTAATAATAATGTGGAGGATTCAGAGTTGAGAGCTCTTTTCGAGCAATATGGTCACATTAGGACTCTATATACTGCATGTAAACATCGTGGGTTTGTTATGGTATCCTATTATGACATCCGTGCTGCTCGAACAGCCATGCACGCATTACAAAACAAACCTTTACGACGCCGGAAACTTGACATTCACTTCTCAATACCAAAGGATAATCCATCTGACAAGGACATCAACCAAGGAACCTTGGTAGTTTTCAATTTGGACCCATCTGTTTCGAATGAGGACCTCCGTACAATATTTGGGGCATATGGGGAGGTCAAAGAGATACGGGAAACGTCTCACAAAGGCCATCACAAGTTTATTGAATTTTATGATGTGAGGGCTGCAGAAGCAGCACTAAAATCATTAAACAGGAGTAACATAGCTGGGAGGCGAATAAAGGTGGAGCTTAGCCGGCCTGGCAGAACTCGTCGAAATTTAGTGCTTCAAACAAATCAAGAGCTTGATCATGATGAAAAGCTAAGTTTCCGACATCAGATGGGTTCACCTGTGGCCAATTCTCCACCCGGTTACTGGTTGCGGTTCAACAGCACTGTTGAAAATAACTCATTTCAAACTATAAGCGATTCTCCTGGTTCTGGGATCATGAGTCCATCAATAGGAAACCATTTAGCTGGATTAGCTTCTGTTTTGCACCCTCCACTATCCAATGCCATGAAGGGTGTAGCTATTGGGAAAGATTTAGCAGGGAGTCAGCATGCAGAGCATATATTTGCTAGTAGTAATTCATCGCATGGAGAGACATTTCAATCTCATTCTCTTCCAGAACCAAAATTCATCCCATATAGTGGAGCTTTGTCTTCTTTTGGTTCATCTCCTTCAAATGGATCCTCGGTGGAAACCTTGTCAGGGTCACAATTTTTATGGGGAAGTCCGAACTTGTACTCACAGGACATCAAACCTTCAGCTTGGCCAACACCATCTGTGAGGCATTCATTTACAGCAAATGGAAATAGCCATGCCTTCCAAAACCCTGCTCAAGAGAGTTCTTTTATTGGTTTGTCCCAGAATCGTCACCATAATCATGTTGGCTCTGCTCCATCAGGTTTTCCTTTTGAGAGAAACTTTGGAGTCCTTTCGAAGTCACCTGAAACGTCGTTCGTGAACCATGTTGGTTATGGAGGCATAGGTCTGGGTCACAGTAAGGGGAATTACATGGTTAATATGGGTGAATCTGTTAATGCCGGGATCACTATACCAAGAAATATGTCTGAACATGGTTCGCCAAACATTGGAATGAGATCATCTCCCAGACTTAGTCTTGTGTTTTCAGGTAATGGTCCATACCCAGGATTGCCACCTACTACTACTACTACTACTACTACTACTTCAGTGTTTGGTTTCGTGGACCCTGGGCGGAATAGGCGCATAGAGAACAATGGGGGCCAAGCTGATAGCAGCAAGAAGCAATTTCATCTTGACTTGGATAGGATTAAAAACAGTGAAGACAGAAGGACTACCTTAATGATAAAGAACATCCCAAATAAATACACCTCAAAAATGTTATTAGCTGCTATTGATGAAAAGCACAAGGGTACCTATGATTTTTTCTATCTACCAATCGACTTTAAGAATAAATGCAATGTGGGATACGCATTTATCAACATGCTGTCGGCATCACACATTATTCCATTCTATGAGACATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCCCTGGCATATGCACGAATCCAAGGAAAGGCTGCATTGGTGAACCATTTCCAGAATTCAAGTCTGATGAACGAAGATGAGCGGTGCCGCCCAGTCGTCTTCCATTCACAGGATCCTGAAGGTGGTGATAAGATCATACAAGATCATACAAGTGATTCGACCTCGGAGACAAAATAA 2478 0.4209 MKESVNHSYPGPTKIPSENTPKEVQQGAWEDLSRSDLYHVSSHTGFFSRSLPVPLHEKLNLSSADGFKKSHQDVDGNGLLEDADTCVIGTMLPDDEEDLLADFDLSGLPNSLEDLEEYDVFGSGGGMELEADPQESLNVGVSKLSFSDGHAANGLPYNSFLNGVGIVAGEHPYGEHPSRTLFVRNINNNVEDSELRALFEQYGHIRTLYTACKHRGFVMVSYYDIRAARTAMHALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRTIFGAYGEVKEIRETSHKGHHKFIEFYDVRAAEAALKSLNRSNIAGRRIKVELSRPGRTRRNLVLQTNQELDHDEKLSFRHQMGSPVANSPPGYWLRFNSTVENNSFQTISDSPGSGIMSPSIGNHLAGLASVLHPPLSNAMKGVAIGKDLAGSQHAEHIFASSNSSHGETFQSHSLPEPKFIPYSGALSSFGSSPSNGSSVETLSGSQFLWGSPNLYSQDIKPSAWPTPSVRHSFTANGNSHAFQNPAQESSFIGLSQNRHHNHVGSAPSGFPFERNFGVLSKSPETSFVNHVGYGGIGLGHSKGNYMVNMGESVNAGITIPRNMSEHGSPNIGMRSSPRLSLVFSGNGPYPGLPPTTTTTTTTTSVFGFVDPGRNRRIENNGGQADSSKKQFHLDLDRIKNSEDRRTTLMIKNIPNKYTSKMLLAAIDEKHKGTYDFFYLPIDFKNKCNVGYAFINMLSASHIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVNHFQNSSLMNEDERCRPVVFHSQDPEGGDKIIQDHTSDSTSETK 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g06219 825 CDD RRM1_MEI2_like 178 254 IPR034453 -
Arst3g06219 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 337 IPR000504 GO:0003723
Arst3g06219 825 MobiDBLite consensus disorder prediction 1 27 - -
Arst3g06219 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 252 IPR000504 GO:0003723
Arst3g06219 825 SMART rrm1_1 265 333 IPR000504 GO:0003723
Arst3g06219 825 SMART rrm1_1 180 248 IPR000504 GO:0003723
Arst3g06219 825 SMART rrm1_1 691 767 IPR000504 GO:0003723
Arst3g06219 825 PANTHER RNA RECOGNITION MOTIF-CONTAINING 169 805 - -
Arst3g06219 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 245 IPR000504 GO:0003723
Arst3g06219 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 331 IPR000504 GO:0003723
Arst3g06219 825 Pfam RNA recognition motif 2 689 785 IPR007201 -
Arst3g06219 825 MobiDBLite consensus disorder prediction 10 26 - -
Arst3g06219 825 FunFam Protein MEI2-like 1 263 358 - -
Arst3g06219 825 SUPERFAMILY RNA-binding domain, RBD 691 776 IPR035979 GO:0003676
Arst3g06219 825 MobiDBLite consensus disorder prediction 800 825 - -
Arst3g06219 825 CDD RRM2_MEI2_like 263 333 - -
Arst3g06219 825 SUPERFAMILY RNA-binding domain, RBD 176 340 IPR035979 GO:0003676
Arst3g06219 825 CDD RRM3_MEI2_like 692 777 IPR034454 -
Arst3g06219 825 MobiDBLite consensus disorder prediction 808 825 - -
Arst3g06219 825 FunFam MEI2-like protein 5 isoform 2 168 262 - -
Arst3g06219 825 Gene3D - 168 262 IPR012677 -
Arst3g06219 825 Gene3D - 263 361 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g06219 Arst-Chr3 135048586 135053605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g06219 176 321 Eukaryotic Initiation Factors Gene Family AT1G71770 28.846 2.36e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g06219 - - gmx:100800877 1186.4