Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g06218 ATGAAGGAGTCTGTAAACCATTCTTATCCTGTAGGTCCAACCAAGATTCCATCAGAAAATACACCTAAAGAAGTGCAACAAGGTGCATGGGAGGATTTATCTAGATCTGATCTATACCATGTTTCATCTCATACTGGCTTCTTTTCTAGGTCATTGCCTGTTCCGTTACATGAAAAGTTGAACTTAAGCAGTGCTGATGGCTTTAAAAAGTCCCATCAAGATGTAGATGGGAATGGTTTACTTGAGGATGCTGATACTTGTGTGATAGGAACCATGCTTCCAGATGATGAGGAGGACCTTTTAGCTGATTTTGACCTAAGTGGTTTGCCAAACTCTCTTGAGGATTTGGAGGAGTATGATGTTTTTGGTAGTGGTGGAGGTATGGAACTGGAAGCTGATCCTCAGGAAAGTCTTAATGTGGGTGTGTCAAAATTAAGCTTCTCTGATGGTCATGCTGCCAATGGTTTGCCCTATAATTCTTTTCTTAATGGTGTGGGGATTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGGACATTATTTGTTCGAAATATTAATAATAATGTGGAGGATTCAGAGTTGAGAGCTCTTTTCGAGCAATATGGTCACATTAGGACTCTATATACTGCATGTAAACATCGTGGGTTTGTTATGGTATCCTATTATGACATCCGTGCTGCTCGAACAGCCATGCACGCATTACAAAACAAACCTTTACGACGCCGGAAACTTGACATTCACTTCTCAATACCAAAGGATAATCCATCTGACAAGGACATCAACCAAGGAACCTTGGTAGTTTTCAATTTGGACCCATCTGTTTCGAATGAGGACCTCCGTACAATATTTGGGGCATATGGGGAGGTCAAAGAGATACGGGAAACGTCTCACAAAGGCCATCACAAGTTTATTGAATTTTATGATGTGAGGGCTGCAGAAGCAGCACTAAAATCATTAAACAGGAGTAACATAGCTGGGAGGCGAATAAAGGTGGAGCTTAGCCGGCCTGGCAGAACTCGTCGAAATTTAGTGCTTCAAACAAATCAAGAGCTTGATCATGATGAAAAGCTAAGTTTCCGACATCAGATGGGTTCACCTGTGGCCAATTCTCCACCCGGTTACTGGTTGCGGTTCAACAGCACTGTTGAAAATAACTCATTTCAAACTATAAGCGATTCTCCTGGTTCTGGGATCATGAGTCCATCAATAGGAAACCATTTAGCTGGATTAGCTTCTGTTTTGCACCCTCCACTATCCAATGCCATGAAGGGTGTAGCTATTGGGAAAGATTTAGCAGGGAGTCAGCATGCAGAGCATATATTTGCTAGTAGTAATTCATCGCATGGAGAGACATTTCAATCTCATTCTCTTCCAGAACCAAAATTCATCCCATATAGTGGAGCTTTGTCTTCTTTTGGTTCATCTCCTTCAAATGGATCCTCGGTGGAAACCTTGTCAGGGTCACAATTTTTATGGGGAAGTCCGAACTTGTACTCACAGGACATCAAACCTTCAGCTTGGCCAACACCATCTGTGAGGCATTCATTTACAGCAAATGGAAATAGCCATGCCTTCCAAAACCCTGCTCAAGAGAGTTCTTTTATTGGTTTGTCCCAGAATCGTCACCATAATCATGTTGGCTCTGCTCCATCAGGTTTTCCTTTTGAGAGAAACTTTGGAGTCCTTTCGAAGTCACCTGAAACGTCGTTCGTGAACCATGTTGGTTATGGAGGCATAGGTCTGGGTCACAGTAAGGGGAATTACATGGTTAATATGGGTGAATCTGTTAATGCCGGGATCACTATACCAAGAAATATGTCTGAACATGGTTCGCCAAACATTGGAATGAGATCATCTCCCAGACTTAGTCTTGTGTTTTCAGGTAATGGTCCATACCCAGGATTGCCACCTACTACTACTACTACTACTACTACTACTTCAGTGTTTGGTTTCGTGGACCCTGGGCGGAATAGGCGCATAGAGAACAATGGGGGCCAAGCTGATAGCAGCAAGAAGCAATTTCATCTTGACTTGGATAGGATTAAAAACAGTGAAGACAGAAGGACTACCTTAATGATAAAGAACATCCCAAATAAATACACCTCAAAAATGTTATTAGCTGCTATTGATGAAAAGCACAAGGGTACCTATGATTTTTTCTATCTACCAATCGACTTTAAGAATAAATGCAATGTGGGATACGCATTTATCAACATGCTGTCGGCATCACACATTATTCCATTCTATGAGACATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCCCTGGCATATGCACGAATCCAAGGAAAGGCTGCATTGGTGAACCATTTCCAGAATTCAAGTCTGATGAACGAAGATGAGCGGTGCCGCCCAGTCGTCTTCCATTCACAGGATCCTGAAGGTGGTGATAAGATCATACAAGATCATACAAGTGATTCGACCTCGGAGACAAAATAA 2481 0.4208 MKESVNHSYPVGPTKIPSENTPKEVQQGAWEDLSRSDLYHVSSHTGFFSRSLPVPLHEKLNLSSADGFKKSHQDVDGNGLLEDADTCVIGTMLPDDEEDLLADFDLSGLPNSLEDLEEYDVFGSGGGMELEADPQESLNVGVSKLSFSDGHAANGLPYNSFLNGVGIVAGEHPYGEHPSRTLFVRNINNNVEDSELRALFEQYGHIRTLYTACKHRGFVMVSYYDIRAARTAMHALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRTIFGAYGEVKEIRETSHKGHHKFIEFYDVRAAEAALKSLNRSNIAGRRIKVELSRPGRTRRNLVLQTNQELDHDEKLSFRHQMGSPVANSPPGYWLRFNSTVENNSFQTISDSPGSGIMSPSIGNHLAGLASVLHPPLSNAMKGVAIGKDLAGSQHAEHIFASSNSSHGETFQSHSLPEPKFIPYSGALSSFGSSPSNGSSVETLSGSQFLWGSPNLYSQDIKPSAWPTPSVRHSFTANGNSHAFQNPAQESSFIGLSQNRHHNHVGSAPSGFPFERNFGVLSKSPETSFVNHVGYGGIGLGHSKGNYMVNMGESVNAGITIPRNMSEHGSPNIGMRSSPRLSLVFSGNGPYPGLPPTTTTTTTTTSVFGFVDPGRNRRIENNGGQADSSKKQFHLDLDRIKNSEDRRTTLMIKNIPNKYTSKMLLAAIDEKHKGTYDFFYLPIDFKNKCNVGYAFINMLSASHIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVNHFQNSSLMNEDERCRPVVFHSQDPEGGDKIIQDHTSDSTSETK 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g06218 826 CDD RRM1_MEI2_like 179 255 IPR034453 -
Arst3g06218 826 Pfam RNA recognition motif 2 690 786 IPR007201 -
Arst3g06218 826 CDD RRM3_MEI2_like 693 778 IPR034454 -
Arst3g06218 826 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 253 IPR000504 GO:0003723
Arst3g06218 826 SMART rrm1_1 266 334 IPR000504 GO:0003723
Arst3g06218 826 SMART rrm1_1 692 768 IPR000504 GO:0003723
Arst3g06218 826 SMART rrm1_1 181 249 IPR000504 GO:0003723
Arst3g06218 826 SUPERFAMILY RNA-binding domain, RBD 692 777 IPR035979 GO:0003676
Arst3g06218 826 MobiDBLite consensus disorder prediction 1 24 - -
Arst3g06218 826 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 246 IPR000504 GO:0003723
Arst3g06218 826 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 332 IPR000504 GO:0003723
Arst3g06218 826 MobiDBLite consensus disorder prediction 801 826 - -
Arst3g06218 826 Gene3D - 169 263 IPR012677 -
Arst3g06218 826 Gene3D - 264 356 IPR012677 -
Arst3g06218 826 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 338 IPR000504 GO:0003723
Arst3g06218 826 PANTHER RNA RECOGNITION MOTIF-CONTAINING 170 806 - -
Arst3g06218 826 CDD RRM2_MEI2_like 264 334 - -
Arst3g06218 826 FunFam MEI2-like protein 5 isoform 2 169 263 - -
Arst3g06218 826 FunFam Protein MEI2-like 1 264 359 - -
Arst3g06218 826 MobiDBLite consensus disorder prediction 809 826 - -
Arst3g06218 826 SUPERFAMILY RNA-binding domain, RBD 177 341 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g06218 Arst-Chr3 135048586 135053606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g06218 177 322 Eukaryotic Initiation Factors Gene Family AT1G71770 28.846 2.30e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g06218 - - gmx:100800877 1183.32