Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g06200 ATGGGAATACAGGGTTTGTTGCCGCAGTTGAAATCGATAATGGCTCCGATTCACATAAAGGAGCTTGAGGGGTGCTCTGTTGCGGTGGACACATATTCATGGCTCCACAAAGGCGCACTCTCTTGCAGCACCCACCTCTGCAAAAACATTCCCACAACCAGGCACATTGAGTATTGCATGCATAGAGTGAATTTGCTGCGCCATTTTGGTATTAACCCCATTCTTGTATTTGACGGTGGACTTCTACCCATGAAGGCCGAACAAGAGAATAAGCGTGCCAGGGTAAGAAAGGAAAATTTTGCACGAGCTGTTGAACATGAGTCAAATGGAAATAACACTGCTGCTTTTGAGTGCTACCAGAAAGCTGTTGATATTTCACCTCTCATTGCGCGCGACCTAATTCAGGTATTGAGGCAGGAGAATGTGCAATATATTGTAGCTCCTTATGAGGCTGATGCTCAGATGGCTTTCTTGGCCATTAGTGGACAGGTTGATGCAGTTATAACTGAAGATTCTGATCTTATACCATTTGGATGCCCAAGGATTATCTTCAAAATGGACAAGTTTGGACAAGGAGTTGAGTTTCGGTACTCCATGTTACAGAAGAATAAGGAGCTTTGTTTTGAAGGATTTGACAGGCAAATGCTTCTCGAAATGTGTATCTTGAGTGGCTGCGACTATCTTCAGTCCTTGCCAGGTATGGGCCTGAAAAGAGCTCATGCAATCATTAAAAGATTTAAAAGTTATGACAAGGTTCTTAAGCACTTGAGATACAGTGGTGTTTCTGTGCCTCCCTTATACGAAGAGTCGTTCAGGAAGGCTATATTGACTTTCCACTTTCAACGGGTGTATGATCCAATTAATGAAAACGTTATTCATTTATCGAATATACCTGATGATATTGGTGACGAGTTAGATTTTTTAGGCCCATCACTGCCAAAAGATATAGCACAAGGCATAGCAAAAGGAGATCTCGATCCATTTACCAAAATGCCATTTGAGGGGGCGATTCTTAATCCCGGATTAGCAACTGCTGGAACTTCACAATTTAAAACTATTCATTCTGAAAGTGTGAAGAAAAAGATTGATCTGCCTGTGCAAAAGAATCTCTTGACTAAGTATTTTTGTTTTGCATCTGTTGAAGCAAAAAGGAATTTCAGAGCACCTCGGGTACAACCCACCCCTGCTAATCATGGTACATTTGATTCCTCTTTTGTCAATTCTATGGATCACGAAACTTCAGAGGCTACAGCTAGCAAGACAAAGAACTCCGCTGCCACTTTAGTTGACTCCGAGAATTCGGACCCTGACAGTAGCCCTCCTCGTGCAAATGACTTTATTGAAAACAGCTTAGCAACCAATTTTTCTGAGTATATGAAATCTCCATCTCATGTTTCTATGGTGGGTGAAAGAAACAGAAGTCCTGAAAATACAGCACTACGACAAGTTAGGCAGCCAATTCATAAACCCTGTGTGGGGTTGCATAAGGAGCATGAGCATACACTTGTTCAAGACACGATTGAGTCAAAAACCAAGGAGATTACAAGAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCACAACAAAGTAGAAAAGAATGATTATGATGATAAACAAGCTCACCCGTCTGAAGCTGGCACTTTAATTGGTGAGGAAAAAAATTCCATATCCGACGGTGATTCAAGTGGCAATCTTGTGAAGAATAAAGACTTGAAGAGGAAAACCTCCCCTAATGACAACATTCAAAATGAAAATTTGCAGCCGAGGTCTATTTGTCCTACATCACCCCCTCATGATAATGATGGAAAAAATAATAACGGTGAAGAGAAATTCGGTGTAAACATTTCCCATCTAGGCCATTATTCAGAAATAGCTGAGAAATCTGTAGAAAGATTTGCCTCCGTGATCTCATCCTTCAGATGCTCTTCTGGCTCTCGTGCCAGTGGTCTCCGTGCTCCTCTAAGAGATGTTCGGAACAGTTGCAATAACAGGCCAACAAATGTGGATTTCGGACAATATGCATACGTGTCAAAACAAAGGAAGACCAGCAGAACTAAACTTGATTGA 2067 0.4151 MGIQGLLPQLKSIMAPIHIKELEGCSVAVDTYSWLHKGALSCSTHLCKNIPTTRHIEYCMHRVNLLRHFGINPILVFDGGLLPMKAEQENKRARVRKENFARAVEHESNGNNTAAFECYQKAVDISPLIARDLIQVLRQENVQYIVAPYEADAQMAFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVEFRYSMLQKNKELCFEGFDRQMLLEMCILSGCDYLQSLPGMGLKRAHAIIKRFKSYDKVLKHLRYSGVSVPPLYEESFRKAILTFHFQRVYDPINENVIHLSNIPDDIGDELDFLGPSLPKDIAQGIAKGDLDPFTKMPFEGAILNPGLATAGTSQFKTIHSESVKKKIDLPVQKNLLTKYFCFASVEAKRNFRAPRVQPTPANHGTFDSSFVNSMDHETSEATASKTKNSAATLVDSENSDPDSSPPRANDFIENSLATNFSEYMKSPSHVSMVGERNRSPENTALRQVRQPIHKPCVGLHKEHEHTLVQDTIESKTKEITRKVIVRSAYFQHNKVEKNDYDDKQAHPSEAGTLIGEEKNSISDGDSSGNLVKNKDLKRKTSPNDNIQNENLQPRSICPTSPPHDNDGKNNNGEEKFGVNISHLGHYSEIAEKSVERFASVISSFRCSSGSRASGLRAPLRDVRNSCNNRPTNVDFGQYAYVSKQRKTSRTKLD 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g06200 688 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Arst3g06200 688 Gene3D - 1 207 - -
Arst3g06200 688 SMART xpgineu 138 209 IPR006086 GO:0004518
Arst3g06200 688 SMART xpgn3 1 99 IPR006085 GO:0004518
Arst3g06200 688 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Arst3g06200 688 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 335 IPR036279 -
Arst3g06200 688 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 441 IPR006084 -
Arst3g06200 688 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Arst3g06200 688 MobiDBLite consensus disorder prediction 578 611 - -
Arst3g06200 688 FunFam exonuclease 1 209 281 - -
Arst3g06200 688 MobiDBLite consensus disorder prediction 409 445 - -
Arst3g06200 688 Gene3D - 209 281 - -
Arst3g06200 688 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Arst3g06200 688 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Arst3g06200 688 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Arst3g06200 688 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Arst3g06200 688 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Arst3g06200 688 FunFam Exonuclease 1, putative 1 207 - -
Arst3g06200 688 MobiDBLite consensus disorder prediction 533 611 - -
Arst3g06200 688 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Arst3g06200 688 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Arst3g06200 688 Pfam XPG I-region 141 226 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g06200 Arst-Chr3 134985327 134989551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g06200 1 264 Core DNA Replication Machinery Family AT5G26680 28.417 1.10e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g06200 K10746 - gmx:100798062 855.129