Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g06185 ATGGCTGCGAATCCATCGTCAGAAACAAATGGAAAGCATGAAGTGGTTATGAATATAGAAAACAACAACAACAACACAAGCAATGGAAACTCATCATCATCATCACCCACCTCTCTCCCTGTCTCTTTGTTGCAGAAGTTTGTGGCAGAAGTGGTGGGCACATATTTCTTGATATTTGCAGGGTGTGCTGCGGTGGTTGTGAACAAGAACAACGACAATGTCGTTACACTACCGGGGATTTCTATTGTTTGGGGATTGGCCGTTATGGCACTCGTGTATTCCATCGGTCACATCTCTGGTGCCCACTTCAACCCTGCTGTTACCATCGCTTTTGCTTCTACTAGAAGGTTCCCCTTCAAGCAGGTACCGGTCTATGTAGCAGCTCAGGTTGTTGGATCTACACTTGCAAGTGGAACCCTCAGATTATTATTCGATGGGAATCAAAACCAATTCGCAGGAACACTCCCTGCTGGCTCTGATCTACAAGCATTTGTCATCGAATTCATCATCACTTTTTATCTTATGTTCATCATATCCGGGGTTGCAACCGATAGCAGAGCGGTAGGTGAGTTGGCTGGGCTTGCAGTTGGCTCCACGGTGTTGCTGAATGTGATGTTTGCAGGGGCAATAACAGGGGCATCAATGAACCCAGCAAGGAGCATAGGGCCAGCAATAGTGCACAATCAATACAAAGGGATATGGATATACTTGGTAGCTCCAGTTTTGGGGGCTGTTGCTGGTACTTGGGTTTACAACGCTCTCAGGCACACCGCCAACCCTCCTTCTCGTGTTATTAAAAACACCGCTTCTTTCGTCAAAAGACAAGCTAGTCTTTAG 837 0.4648 MAANPSSETNGKHEVVMNIENNNNNTSNGNSSSSSPTSLPVSLLQKFVAEVVGTYFLIFAGCAAVVVNKNNDNVVTLPGISIVWGLAVMALVYSIGHISGAHFNPAVTIAFASTRRFPFKQVPVYVAAQVVGSTLASGTLRLLFDGNQNQFAGTLPAGSDLQAFVIEFIITFYLMFIISGVATDSRAVGELAGLAVGSTVLLNVMFAGAITGASMNPARSIGPAIVHNQYKGIWIYLVAPVLGAVAGTWVYNALRHTANPPSRVIKNTASFVKRQASL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g06185 278 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst3g06185 278 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst3g06185 278 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst3g06185 278 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst3g06185 278 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst3g06185 278 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst3g06185 278 PANTHER AQUAPORIN NIP2-1 16 270 IPR034294 -
Arst3g06185 278 NCBIfam MIP family channel protein 49 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst3g06185 278 SUPERFAMILY Aquaporin-like 40 258 IPR023271 -
Arst3g06185 278 Gene3D Glycerol uptake facilitator protein. 3 262 IPR023271 -
Arst3g06185 278 Pfam Major intrinsic protein 41 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst3g06185 278 CDD MIP 45 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Arst3g06185 278 ProSitePatterns MIP family signature. 102 110 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g06185 Arst-Chr3 134894838 134896470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g06185 12 277 Major Intrinsic Protein MIP AT5G37820 55.390 1.28e-99 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g06185 K09874 - gmx:100798526 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g06185 3 134894838 134896470 Arst3g06185 3 134894838 134896470 ECH
Arst3g06185 3 134894838 134896470 Arst10g00039 10 711496 712790 PCT