Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g06181 ATGGATGAAGCTCAGAGCAGTTCCAATTCCCTACCACCTTTTCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACTGATCCCATTGTTTCTTGGAGTGCCTCTAATAGAAGTTTCGTTGTGTGGAATCCTCCGGATTTTGCTAGGGATTTGCTGCCTAGATTCTTCAAGCACAATAACTTCTCAAGCTTTATCAGGCAGCTGAACACTTATGGTTTTAAGAAGGTTGATCCTGAACAATGGGAATTTGCAAATGATGATTTTGTAAGAGGTCAACCACATCGCATGAAGAATATCCACAGACGAAAACCAGTTCATAGTCATTCTTTACAGAATCTTCAGGCGCAAGCTCCACTGACAGAATCAGAAAGGATGAGTTTACAAGATGAAATAGAGAGGCTTAACCGTGAAAAAGAACAGCTTCTTATGGAGCTACAGAGACATGAACAGGAGTGGCAAGAATATGAGATTCGAATACACTGCTCGAAAGACCGTGTGGAGAAGATGGAGCAGAAGCATCAAAAGATGATCTCTTCTGTTTCCAGTGTACTGCAGAAACCTGGAATTGACTTGAATCAATTGGCATTGCTAGAAACCACAGATAGAAAACGAAGGTTACCAAGAAGTGGCTATCTTAGTGATGAAACTAACATTGAAGATACAACTGAGACCGAACAAATGTTACCCACAGAAAATTCACAGGACACCTCCGTTTTGACAATAATCACAGAGCAGTTGGATCAGCTCGAGTCATCCATGGTATTTTGGGAAACCATTTCAAATGATATTTCTGACACGACCATTCACATTCATTCAAGCTTGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCTGTCTATATCTTGCCCCCTACTAGATATTGAAGTTCTGCCTAAGTCATCTGGAATTGACATGAACTCTGAGCCTGCTTCTGCTCCTGTTTCCGAGCCTGCTTCCGCATCAAAAGAACAAGCTGCCGGCACAACCCCTGTGGTGGTTGGTGTTAATGATGTATTTTGGGAACAATTCTTGACAGAGAATCCTGGTTCATCAGAAGCACAGGAAGTACAATCAGAAAGAAAGTATCATGATACTAGCAAGGGTGAAGGAAAACCTAGTGACCCAGGAAAGTTTTGGTGGAACATGCGAAATACAAGTAATCTTCCAGAACAAATAGGTCATGTTAGTCAAGCAGAAAAAACATAG 1212 0.4142 MDEAQSSSNSLPPFLAKTYEMVDDPSTDPIVSWSASNRSFVVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYGFKKVDPEQWEFANDDFVRGQPHRMKNIHRRKPVHSHSLQNLQAQAPLTESERMSLQDEIERLNREKEQLLMELQRHEQEWQEYEIRIHCSKDRVEKMEQKHQKMISSVSSVLQKPGIDLNQLALLETTDRKRRLPRSGYLSDETNIEDTTETEQMLPTENSQDTSVLTIITEQLDQLESSMVFWETISNDISDTTIHIHSSLDFDESTSCADSLSISCPLLDIEVLPKSSGIDMNSEPASAPVSEPASASKEQAAGTTPVVVGVNDVFWEQFLTENPGSSEAQEVQSERKYHDTSKGEGKPSDPGKFWWNMRNTSNLPEQIGHVSQAEKT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g06181 403 FunFam Heat shock transcription factor 1 7 104 - -
Arst3g06181 403 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g06181 403 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g06181 403 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g06181 403 MobiDBLite consensus disorder prediction 381 403 - -
Arst3g06181 403 MobiDBLite consensus disorder prediction 358 373 - -
Arst3g06181 403 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g06181 403 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 313 IPR027725 -
Arst3g06181 403 MobiDBLite consensus disorder prediction 305 329 - -
Arst3g06181 403 MobiDBLite consensus disorder prediction 306 328 - -
Arst3g06181 403 Gene3D - 6 104 IPR036388 -
Arst3g06181 403 MobiDBLite consensus disorder prediction 348 403 - -
Arst3g06181 403 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g06181 403 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g06181 403 Coils Coil 111 159 - -
Arst3g06181 403 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g06181 Arst-Chr3 134845848 134848137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g06181 7 403 HSF AT4G18880 52.451 1.48e-120 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst3g06181 HSF_DNA-bind 9.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g06181 K09419 - gmx:100817602 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g06181 3 134845848 134848137 Arst3g06181 3 134845848 134848137 ECH
Arst10g00033 10 684689 686750 Arst3g06181 3 134845848 134848137 ECH
Arst3g06181 3 134845848 134848137 Arst10g00033 10 684689 686750 PCT