Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g06113 ATGTGTATAAAGTGTGAAGAACAAAAGACCAAAGAGAAAGTGAATATGAAAAACAAGTCAAAGTTTGTTGGGGTGAGGCAAAGAGCTTCTGGAAAATGGGCAGCAGAGATCAAAGATACATCAAAGCAGATAAGGATTTGGCTTGGAACCTATCAAACTGCTGAGGAAGCTGCTAGAGCCTATGATGAAGCAGCTTTTCTCCTTAGAGGTTCCAACACTCGCACCAACTTCAACACTCGTCACACTATTGCTCCCAATTCTCCTATATCTCTCAAAATCAGAAATCTGCTCGATCGTAGAACCATCTCAACTCGAATTCAAAAGCAACTCCCTATGGTTAGTCCCAATGTTCAAGATGCCAAGCAAGAAAACCATGCATGTAGATATAGTGGTAGTAGTGAAGGTGAGTCTTTGTTTTGGGTGCAGAACCAAGTTTCTGACAATGTTTATAGGCCAGAATTGAATATGATGACCTGTGCAACGGGTCCGGTTGAACTAAATGAGTATCAGTTTGATTATTCATGGGCATTAGCTCAACAAAGGATTAATGAATTACCAATATTATCACCAGAAAGTGGATTCAATGAAGAAAGGAAACTGTCAGATTCACTTTTTGCCATGAATGAGGATGAACATGGGAATGAGTATGAGTGTGATGTCAGTTATCCTCTCTCCCACTTGTTCTGCTTTAATTGA 696 0.3994 MCIKCEEQKTKEKVNMKNKSKFVGVRQRASGKWAAEIKDTSKQIRIWLGTYQTAEEAARAYDEAAFLLRGSNTRTNFNTRHTIAPNSPISLKIRNLLDRRTISTRIQKQLPMVSPNVQDAKQENHACRYSGSSEGESLFWVQNQVSDNVYRPELNMMTCATGPVELNEYQFDYSWALAQQRINELPILSPESGFNEERKLSDSLFAMNEDEHGNEYECDVSYPLSHLFCFN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g06113 231 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Arst3g06113 231 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Arst3g06113 231 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Arst3g06113 231 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Arst3g06113 231 FunFam ethylene-responsive transcription factor RAP2-11 20 79 - -
Arst3g06113 231 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 135 - -
Arst3g06113 231 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Arst3g06113 231 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Arst3g06113 231 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Arst3g06113 231 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g06113 Arst-Chr3 134387453 134388322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g06113 7 229 AP2-EREBP Transcription Factor Family AT5G19790 40.873 2.75e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst3g06113 AP2 2.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g06113 K09286 - gmx:100803832 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g06113 3 134387453 134388322 Arst3g06113 3 134387453 134388322 ECH