Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g06065 ATGGCAGCACAAAGTTCGGATGCTTGTCCTTCTGAATCCTCAAGCATCTCTGGCACCTCCCAAGGGATTGATAACAACACAAGGGACAATGATCTAGCTTCTGAACCGGACCAAGCCTCAAATTCCAATAATAATATGGAAAGGATGTTGGATTTTGTGAAGCTCTCCCACAACGATGTTTCATCGATTCGATGTTCTTCCAACGTGAAAGAGCTCGATTTTTTCAACACTGGGAAGAGGGTGATGGGATCATCGTCAACTTGGACTAATAATAATGTTGACGAAGGAAAAGATGAAAACACCGAAGAAAAAGAAAGGATTTCAGAGCCGAAAACTTTCTCTTGCAATTTTTGCAAGAGAGAGTTCTCGTCCTCTCAAGCCCTTGGTGGGCACCAAAATGCCCACAAACAAGAGCGTGCGATAGCGAAACGTCGCCAAGGGATGGACACGGGTGCTTTTGGTCACCCTCACTTTCCATATTACCCTTACCATAGCTTTTCCACACCATCTTTATACGGGTCCTATAATAGGACACTTGGGGTAAGAGTCGAATCCATGATTCACAAACCTTCTTATCCTTGGTCTGCTGCTCTTAGGTTTGGTCGTAATCTTAATTGGTCAACGCAGGGGATTCTTGGTTCATCATCATCATTAGCACTTGATAGGTTAAGTATTGAGGGTTTGCAACCAAATAATGAAGTAGGCGGGGTTAGTGGAATTCAAGCAAGTTCTTCAAATTTGAGAAAAGAAGATGATAATGGTGGTAATGGAACTAATCCCCAATTAGGAGATTCTTCTACCAACAATGTTGCTACAAGTCTCACTCGCCATGCAAAGGATGATCAGGATCCCAAGACAGATAATGAACCCTCTAGTTCTGAGTCTCTGGGGCTTGATTTGTCACTTAAGCTTTAA 915 0.4295 MAAQSSDACPSESSSISGTSQGIDNNTRDNDLASEPDQASNSNNNMERMLDFVKLSHNDVSSIRCSSNVKELDFFNTGKRVMGSSSTWTNNNVDEGKDENTEEKERISEPKTFSCNFCKREFSSSQALGGHQNAHKQERAIAKRRQGMDTGAFGHPHFPYYPYHSFSTPSLYGSYNRTLGVRVESMIHKPSYPWSAALRFGRNLNWSTQGILGSSSSLALDRLSIEGLQPNNEVGGVSGIQASSSNLRKEDDNGGNGTNPQLGDSSTNNVATSLTRHAKDDQDPKTDNEPSSSESLGLDLSLKL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g06065 304 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Arst3g06065 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Arst3g06065 304 SUPERFAMILY beta-beta-alpha zinc fingers 110 140 IPR036236 -
Arst3g06065 304 MobiDBLite consensus disorder prediction 229 304 - -
Arst3g06065 304 MobiDBLite consensus disorder prediction 234 275 - -
Arst3g06065 304 MobiDBLite consensus disorder prediction 86 108 - -
Arst3g06065 304 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 304 IPR044246 GO:0009788
Arst3g06065 304 MobiDBLite consensus disorder prediction 1 44 - -
Arst3g06065 304 Gene3D Classic Zinc Finger 90 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g06065 Arst-Chr3 134055663 134056628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g06065 108 207 C2H2 Transcription Factor Family AT5G10970 52.427 4.49e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst3g06065 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g06065 - - ahf:112735686 457.218