Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g06054 ATGGAGGGAGGAGCGCCGCAATCCACCGGAGGAGGAGCAGGAGGTGGACCGGCGCCGTTCTTGTTGAAGACTTATGACATGGTTGACGATTCCGCCACCGATGACATCGTTTCTTGGAACAGCTCCACCAACAACAGCTTCGTTGTTTGGAACCCGCCGGAGTTCGCGCGCCTTCTTCTACCTACCTATTTCAAGCATAACAACTTTTCTAGCTTCATTCGCCAGCTCAATACCTATGGATTTCACAAAATACATCCTGAACGGTGGGAGTTTGCCAATGATGATTTTATAAAAGACCAAAAGCATCTTCTTAAGAATATCCACCGCCGGAAACCTATTCACAGTCATAGTCATCCTCCCGGCTCTGTTGTGGATCCAGAAAGGGCAGCATTTGAGGAAGAAATTGAAAAACTTAACCGTGAGAAATCTTCTATTGAATCTAATATTTTCAGCTTCAAGCAACATCAGTCAACAGCGAAGATTCATCTAGAAGATTTTCAGCAGCGATTAGATGGTATGGAGAAGAGGCAGAAACATTTGCTGAACATTTTCGAGAAGGCTCTTCAGAATCCTACTTTTGTTGAGCAGCTTTCCCAGAAAATTGAGTCCATTGATTTATCAGCGTATAACAAGAAAAGACGATTGCCTCAAGTTGATGACATGCAACCTGTTGTAGAAAGTAGTTTTGTGGACAATCCTAACAATTTTAGAATGGAATTCGGGAATGTTTTCCATCAAGATTTCTCGAACAAACTCAGACTGGAATTGTCACAAGCTGTGTCAGATATGAACTTAGTGTCGCGTAGCACACAAAGTTCAAATGAACATGGAGAAAGTCCACAGAAGAAAATATCCGAAGGAGAACAAACAGGAATCCAGACAAGAACATCTGTTCCATTTGCACCAGAAACATTGGAGCTTGCTGATACCGGGGCATCTTTCACTTTCAAGATGGATTCATGTTTATCACAAAGAGCGACTTATGCTGAGAGCCCAAAACTGTGCTCATTGGAGCCAAGTAGTGAAGAAGGTGATAGTCACATATCCTGCCAACTTACTTTGGCATCGTGCCCGTTTAAGGTCAACAGAAATTCATACTCAGCAAAAGCACTCCAAATAGACACTCAAGAAATTGGCAAGCTGGCAGAGCCTAGGTTTCATTCCAACAGTAAAGAATCCGACAGTGGAGTTTTCTCAAACCGGAACCAAGCTAATGATGCAACCAATTTGGCTTCTTCACTGGAAACTCCAAGTAACAACCAAGTTACTCAGCCAAACAGGGTAAATGATGTGTTTTGGGAACAGTTCCTTACTGAAAGACCAGGCTGCTCAGACAATGAAGAGGCAATATCCAATTACAGAGGAAACCCGTGCGATGAGCAAGATGAAGGAAGGTTGAATGCAAGGAATGTTAAGAACATGGATCAGCTTACACTTTAA 1440 0.4292 MEGGAPQSTGGGAGGGPAPFLLKTYDMVDDSATDDIVSWNSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFHKIHPERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERAAFEEEIEKLNREKSSIESNIFSFKQHQSTAKIHLEDFQQRLDGMEKRQKHLLNIFEKALQNPTFVEQLSQKIESIDLSAYNKKRRLPQVDDMQPVVESSFVDNPNNFRMEFGNVFHQDFSNKLRLELSQAVSDMNLVSRSTQSSNEHGESPQKKISEGEQTGIQTRTSVPFAPETLELADTGASFTFKMDSCLSQRATYAESPKLCSLEPSSEEGDSHISCQLTLASCPFKVNRNSYSAKALQIDTQEIGKLAEPRFHSNSKESDSGVFSNRNQANDATNLASSLETPSNNQVTQPNRVNDVFWEQFLTERPGCSDNEEAISNYRGNPCDEQDEGRLNARNVKNMDQLTL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g06054 479 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 340 IPR027725 -
Arst3g06054 479 Gene3D - 15 111 IPR036388 -
Arst3g06054 479 FunFam Heat shock transcription factor 1 13 111 - -
Arst3g06054 479 MobiDBLite consensus disorder prediction 382 402 - -
Arst3g06054 479 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g06054 479 Coils Coil 128 148 - -
Arst3g06054 479 Pfam HSF-type DNA-binding 20 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g06054 479 MobiDBLite consensus disorder prediction 266 300 - -
Arst3g06054 479 Coils Coil 163 183 - -
Arst3g06054 479 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
Arst3g06054 479 SMART hsfneu3 16 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g06054 479 MobiDBLite consensus disorder prediction 266 301 - -
Arst3g06054 479 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g06054 479 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g06054 479 PRINTS Heat shock factor (HSF) domain signature 20 43 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g06054 Arst-Chr3 133904099 133907244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g06054 20 479 HSF AT4G13980 55.319 2.33e-161 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst3g06054 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g06054 K09419 - gmx:100786408 755.747