Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g06002 ATGTGCACCTTGCTTTTGAGAATCATTGATTCACANNNNGAGTGGAATGCAAAATCTCCCTCACAATGGGAGTGGGAGCACCTGTTCTTCTCCAATGCAAAAGTAACCGAAAACCCCAAATTACAACCACCACCAGATTGGAGTGGTGAAGCAAATGGAGAAACCAATGTTGGGTTGTTGGACAATTCTGGTGGTAGTGGTTGCTCTGAGTCTGAGCTCATGAACCCATCTTCATCAAGAAGCTCGAAATCTGCTTCCATCAATTCATCTTCCAATAGGGATAGCAAAACATCTATCTTCACCTTAGAAAGTTCCCAAGATGATTCCAGTGGTAAAAAAGAAGAGCTGGTTGAAAACTCTCATTCGCATGAGGCCCCTCCTGGCTCTGGCGAACCGTTGCTTACTCTAAAGCTTGGTAAACGCTTGTATTTTGAGGATGTTTGTCCGGGAAGTGATGCCAAGAAGAACCAGTCTTCCTCGGGTGCTCCGATTCAAGCTGTGAGTAGTGGAAAGAAATCTAAGTCCAATGCTCAGAACATGCAATATCCATGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTCTTGTCAGCTAAAGATTATCATCGCAAACATAGAGTTTGTGAAAATCATTCCAAATCTCCAAAGGTGGTTATTGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGAAAACAAAAGAAGCTGCAGACGGCGTCTTTCAGATCACAATGCACGGCGCCGGAAACCTCATCCTGAAACTGTCCAGTTAAATCCATCAGATTTGACTCCGTCGCCTTTTGCAGTTGGGAGGCAACAGATTAGCCCCTTCACTTGTACAACGAGCGGAGCCGCGAATACAGTTTGGCAAGACATGCGGCGGAGCAAGCAGCTCCCCCAGACGAAAGATTTTCTGTTGAAGGCTGTGAAAGGCAACAATGAGATACCAAGTATTGTGAGCATGGTCACAGAGGATAATTCCAAAGGCATTGCATTTGCAAGTGTAGAGGATTCAACTACGTGCTCTGATACTCAAGATTTCCAGAGTGCTCTCTCTCTTCTGTCAACCGAGTCTCATCAGCCTCAGCGCTTGCCTATTGCTTCCTCAGAATACTGGCACACTGATCAACACCCATTGGCTTCCACCATGTGGCTCACCTACCCAACTTGCGACGACACCATCACCAACCGCTCTCAGGAATTTCAGCTCTTACGAGAACCTTATGATTCTGCTTTTAGTTATCACCACTTGGATTAA 1284 0.4587 MCTLLLRIIDSXXEWNAKSPSQWEWEHLFFSNAKVTENPKLQPPPDWSGEANGETNVGLLDNSGGSGCSESELMNPSSSRSSKSASINSSSNRDSKTSIFTLESSQDDSSGKKEELVENSHSHEAPPGSGEPLLTLKLGKRLYFEDVCPGSDAKKNQSSSGAPIQAVSSGKKSKSNAQNMQYPCCQVEGCGLDLLSAKDYHRKHRVCENHSKSPKVVIAGLERRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPHPETVQLNPSDLTPSPFAVGRQQISPFTCTTSGAANTVWQDMRRSKQLPQTKDFLLKAVKGNNEIPSIVSMVTEDNSKGIAFASVEDSTTCSDTQDFQSALSLLSTESHQPQRLPIASSEYWHTDQHPLASTMWLTYPTCDDTITNRSQEFQLLREPYDSAFSYHHLD 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g06002 427 Gene3D - 175 246 IPR036893 GO:0003677|GO:0005634
Arst3g06002 427 MobiDBLite consensus disorder prediction 36 134 - -
Arst3g06002 427 ProSiteProfiles Zinc finger SBP-type profile. 182 259 IPR004333 GO:0003677
Arst3g06002 427 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 76 374 IPR044817 GO:0003677
Arst3g06002 427 MobiDBLite consensus disorder prediction 249 276 - -
Arst3g06002 427 MobiDBLite consensus disorder prediction 55 106 - -
Arst3g06002 427 MobiDBLite consensus disorder prediction 107 121 - -
Arst3g06002 427 MobiDBLite consensus disorder prediction 154 175 - -
Arst3g06002 427 Pfam SBP domain 185 258 IPR004333 GO:0003677
Arst3g06002 427 FunFam Squamosa promoter-binding-like protein 14 176 246 - -
Arst3g06002 427 SUPERFAMILY SBT domain 183 264 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g06002 Arst-Chr3 133559109 133561073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g06002 14 261 SBP-box Gene Family AT5G43270 49.012 2.00e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst3g06002 SBP 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g06002 - - ahf:112792599 832.787