Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05982 ATGGATGTAGCTGAGTATGAGGAAAAACAGTTTTCAGCAAGTGATGCCAAGTTACATGGACAGATGTGCAAGGCGCTTTCTCTGATATATTGCAAAATATTGTCGGTATTTCCTTCCTTGGAAGCAGCTCGGCCTAGGAGCAAATCTGGAATTCAAGCATTATGTTCTCTGCACATGGCCATAGAGAAGACTAAAAACATTCTTCAGCACTGCACAGAATGTAGTAAACTTTACCTGGCTATTACTGCAGATTCTATTCTTCTAAAATTTGAGAGGGCTAAATGTTCTCTCAAAGATGGTCTTAAACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGATTCAGGAGATTGTCAATGAACTTGCAAGTGTGTCATTTGCACTTGATCCATCAGAGAAGAAAATTGGTGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAATGACTCTAATGACAGCAATGAACTTGAATCTTTTCATCAGGCTGCTAGCAGGCTTGGAATTACATCTTCTAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAGGTCATAGAAAGGGCTCGGGCAGAGGAAGACAAGCGGAAGGAATCAATTGTTGCTTATCTTTTGCATCTTATGAAGAAATACTCAAAATTATTTAGAAATGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCAGGGATCCATTGAGGATGGTGTTCCCGGTGTTCATTGTCAGGCCTTTGACAGACAGTTTTCTAAACTTGGTTCCTTTTGTTTTAAGCCAAATGATATGAAATCAGAGCACATGCCCCTTCCCCCTGAAGAGCTAAGGTGCCCAATATCTTTGCAACTTATGTACGATCCTGTAATCATTGCTTCTGGGCAAACTTACGAAAGGTTATGTATAGAAAAATGGTTTAGTGATGGCCACAGCACTTGCCCAAAGACCCAACAGAAGCTCACACATCTCTGTTTGACTCCTAATTACTGTGTGAAAGGTCTTGTTGCTAGTTGGTGTGAACAGAATGGAGTTAATATTCCCGAAGGCCCTCCTGAATCTCTTGATCTTAATTACTGGAGATTGGCATTCAATGAGTCTGAATCCACAAATTCAAGATCTGCAAACAGTGTCAGCTCTTGCAAGTTGAAGGGTATTAAAGTGGTTCCATTAGAAGAAAGGGGTACCTTTGAGGAAATTGGGGGAAATAGGGCTGAAAGTTTGTCTACACAAGAGGAAGATATTGCGCAGTACTCAAGCCTTCTGGAAATCTTGACTGAGGCTAATAGTTTGAAGAGGAAATGTAAAGTGGTTGAACGATTAAGGCTGCTGCTGAAGGATGATGAAGAAGCAAGGATTTTTATGGGGGCTAATGGCTTCGTTGAAGTACTTTTGCGGTTTTTACAATCAGCTGTGCGTGAAGGAAATTTGATGGCTCAGGAGCATGGAGCAATGGCTCTTTTCAACCTGGCTGTAAATAATGACAGAAATAAGGAAATCATGTTGGCGGCAGGAGTATTATCATTGTTGGAGGAAATGGTTTCAAATACTCCTTCGTATGGTTGTGCAACTGCCTTATACGTGAATCTATCTTCCCTTGAAGAGGCCAAGCGTTTGATTGGTATGAGTCAGGCTGTTCAGTTCTTAATCGAGCTTCTTCAAGCTGACACTGATATTCAATGCAAGCAGGATTCTCTCCATGCTCTCTATAATCTTTCCACTGTAACTTCCAACATTCCTTACCTCCTTTCATCCGGCATCGTTGGCGGCCTACAAATTCTTCTTGTGGACCAGGGCGATTGTAGTTGGATAGAAAAATGTATAGCTATTTTGATAAATTTGGCTTCTTCCCAAGATGGGATGGAGGAAATTTTATCGACTCCAGGAATTATAGGCGCATTGGCTTCAATATTGGACACAGGCGAGCTCCTAGAGCAGGAGCAAGCTGTCTCTTGCCTCCTGCTTCTATGCAATAGAAGTGAGAAATGTTGTGAGATGGTGCTACAAGAAGGTGTCATCCCTGCATTGGTTTCAATATCAGTGAATGGAAATCCAAGAGGGAGAGATAAAGCTCAGAAACTCCTGATGCTGTTTCGAGAGCAGCGGCAACGAGACCATCCGCCAGTGCAAGCTGACGCACATCATTGCCCTCCTGAAACTAACGATTTGTCAATGCCGCCTTCTGAAATGAAGCCGCAATGCAAGTCAATGTCTAGAAGTAAGACAGGGAAAGCTTTTAGCTTTTTCTGGAAAAGCAAGAGCTTTTCTGTCTACCAGTGTTAA 2301 0.4216 MDVAEYEEKQFSASDAKLHGQMCKALSLIYCKILSVFPSLEAARPRSKSGIQALCSLHMAIEKTKNILQHCTECSKLYLAITADSILLKFERAKCSLKDGLKRVEDIVPQSIGCQIQEIVNELASVSFALDPSEKKIGDDLIALLQQGRKFNDSNDSNELESFHQAASRLGITSSRAALAERRALKKVIERARAEEDKRKESIVAYLLHLMKKYSKLFRNEFSDDNDSQGSAPCSPTVQGSIEDGVPGVHCQAFDRQFSKLGSFCFKPNDMKSEHMPLPPEELRCPISLQLMYDPVIIASGQTYERLCIEKWFSDGHSTCPKTQQKLTHLCLTPNYCVKGLVASWCEQNGVNIPEGPPESLDLNYWRLAFNESESTNSRSANSVSSCKLKGIKVVPLEERGTFEEIGGNRAESLSTQEEDIAQYSSLLEILTEANSLKRKCKVVERLRLLLKDDEEARIFMGANGFVEVLLRFLQSAVREGNLMAQEHGAMALFNLAVNNDRNKEIMLAAGVLSLLEEMVSNTPSYGCATALYVNLSSLEEAKRLIGMSQAVQFLIELLQADTDIQCKQDSLHALYNLSTVTSNIPYLLSSGIVGGLQILLVDQGDCSWIEKCIAILINLASSQDGMEEILSTPGIIGALASILDTGELLEQEQAVSCLLLLCNRSEKCCEMVLQEGVIPALVSISVNGNPRGRDKAQKLLMLFREQRQRDHPPVQADAHHCPPETNDLSMPPSEMKPQCKSMSRSKTGKAFSFFWKSKSFSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05982 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Arst3g05982 766 PANTHER U BOX DOMAIN-CONTAINING 23 708 - -
Arst3g05982 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Arst3g05982 766 CDD RING-Ubox_PUB 280 332 IPR045210 -
Arst3g05982 766 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Arst3g05982 766 MobiDBLite consensus disorder prediction 712 742 - -
Arst3g05982 766 Coils Coil 175 195 - -
Arst3g05982 766 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Arst3g05982 766 SUPERFAMILY RING/U-box 273 354 - -
Arst3g05982 766 Gene3D - 402 712 IPR011989 -
Arst3g05982 766 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Arst3g05982 766 SMART arm_5 539 580 IPR000225 GO:0005515
Arst3g05982 766 SMART arm_5 454 498 IPR000225 GO:0005515
Arst3g05982 766 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Arst3g05982 766 SUPERFAMILY ARM repeat 426 704 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05982 Arst-Chr3 133345444 133349856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05982 1 765 U-box Gene Family AT1G24330 65.000 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05982 - - gmx:100794099 1194.87