Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05969 ATGGACTCCGATTCTGACTCTGACGGATCCCATGTCTCTGCAACTCCTCCACGACGAGCAACTCCATCACCGCCGCCACCACAACCTCCGCCGCCGCCACAACCACCTCGTGTTCCTTCCGGAAAATCTAGAATCAGAACCAAAACCTCGAGCTCCAAGAAGCGCCCTTCTGCACCCGATAAAACCCAATCCAAACACGATCCGCTACCCGAACCAAGCCACCAACTCCAAGACCCTTTCTCCCTCCCGACCGCTCTACCGTTTCAAATTCGTCGGTCCTCCGACTGTGACCCCGCACCCCCGTCCACTTCCCAGCCCCTCGAAACCGTCCCGGCGGGGTTCTTCTCCAAATCCGCTTCCTTCTCGAAGATCCGAAGACATTCTATAAGTTTTGAAGCTTCTGGAAACGAACCGCTACTCGATTCTACGTCCAATCTGGGCACCAATGTTGGACTTGATTATGCTCGTGCTTTCCCCGAAGGAGAAAAGGGAAAATGTGGAAGGAGAGAAGAAGAAGGACTCGGGTTTGGTTCTAGAGATAAGAGGAAATTTGGAAAGATAGAAGAAGAGGAAGAAAGAGGAGGACTTGGAGCTGTTTCTAGAGAAAAGGAGAGCTTTGGAAAGAGAGGAGAAGCAGAAGAAGGATTTGGAGTTGGAGTTGGTTCTAGAGTAAAGGGGACATCCGGGAAGAGGCAGCATCCTAACCTGATAGGGGCAAATGCACCATTGCCAGCCGTGAAGCTGCGAAAATGTGGCGGGGAAGGGAACTTTGTGAAATTGAACTTGAGTGGTGGTGGTAAGAGGAGGAAGTTTATGAACAAGGGGTACAAGAAAAGTGGGAGATTTTCTGGCGGTAGAAGGTACACAAGAAGTAGAGGTAAAGTGGGACGTCAAGGGAAGGAGGATCAAGAGGAACTTGGCTTTGATGATGAAGAAGGGTTGGTTACAGAGAGTGGACAAAAGAAGCAAAAGCGGACTTGCAGAGCTAGTGAGGTTCAGTTGAAATTGGTGGACGAGGCAGTGTCTGCTGCTCAAGCTGAGCCTTCGGATGAGAATTTGGTGAACTTGCTGAGCTTGGTTTATGGCTATGATAGTTTTCGAGATGGGCAGCTGGAGGCAATCAAGATGGTTCTTACCGGGAAGTCTACCATGCTTATTTTGCCAACTGGTGCAGGGAAGTCACTCTGCTATCAGCTGCCTGCCTTGATTTTGCCTGGGATTACCCTAGTTGTCAGTCCATTGGTGGCCTTGATGATTGATCAGCTAAGGCAACTGCCCCCTGTGATTAGGGGTGGTTGTTTAAGCAGCAGTCAGACATCTGAGGAAGCAGCTGAAACACTCAACCAGCTTAGACAAGGTGCAGTGAAGGTGCTTTTTGTTTCCCCAGAGCGCTTCCTGAATGAGGAGTTTCTGTCTGTTATTTCTGGTATGTCAGGCATCTCACTTCTTGTTGTTGATGAAGCACACTGTATTTCTGAATGGTCTCACAACTTCCGACCATCATTCATGAGACTCAGAGCATCTTTGCTCCGTAAAAGGCTTAACATAGGTACTATTCTTGCAATGACAGCAACTGCTACAAACACAACTTTAGATGCCATCATGTCTGCTCTAGATATTCCTTGCACAAATCTTATTCAAAAGGCACAACTAAGGGACAATTTTCATTTATCGGTGTCTTTACTGAAAAATAGAATGAAAGACCTTCTGGTTCTCATGAAGTCTTCTCCTTTTGCCGAAGTTCAAAGCATTATCATATACTGCAAATTTCAGTCTGAAACTGATATGATTAGCCGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATGGTGGTATGAGTTCAAAGGAACGCAACTATGTCCAAGAGTTGTTTACCTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTGGATAAAAGTGATGTTGGAGCTGTAATTCATTATAGTCTGCCTAAAAGTCTGGAGGAGTATGTGCAGGAGATAGGCCGTGCTGGAAGGGATGGGAGGTTGTCCTATTGTCACCTATTCTATGATGACGAAACATATTTCAAACTTCGCAGTCTAATGTACAGGTAATAAAATTATTTTTTCTTTCTTTCTTATTGTCAAAGTGAGAAGAGCTCCTGTGGGAGAATATGTTCGTTAATTAAAGAATCTTCTTCACGCAAGTTTGATATGAAAGAAGAGGTGATGCTAACAATTTTGACACGCTTGGAGTTGGGAGATGTGAAGTACTTGTATTTACTTCCACAGATAAATGCAACTTGCAATTTGACATTTCATAAGACTCCCCCACCTATGCTTGCCCAAAGGAATTCTGCTGTTGCTGTTATTCTGAAGAGATCTGAATATAAGCAAGGGCTGTATGTTTTTGACATTCCATCCGTGGCAAATGACGTGGGGATTACAGCAGTTGAGTTAACAAATCAGTTGTACAATCTCAAGTTAACGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAAGATTGTTCAAGTCCCGACGGACTTTTTCTCGCTATCAACAGCTGTTACCCAATGGTTATCAGATGTTGAAAGTTGTAAGGTACAAAAGATAGATGTAATGCTTAATGCTGCAAATTTTGCCATAAATTTATGTGACAAGATGCATGGTTGCAGTGATAACAATCACACACCATGCTTGCAAACGAAAATATTGGATTACTTTGCTGGAGTTGATGATAACAATGATTCCTGCAAAAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCTGATATTAAGGTCTTTCTTCAGAGCAATTCACAAGCAAAATTTACACCAAGAGCTGTGGCCAGGATAATGCATGGAATTGCAAGCCCTGCATATCCTTCTACCATTTGGTGTAGAACCCATTTCTGGGGAAGGTATACACATATAGACTTCAAGGTGGTGATGGAAGCAGCAAAGGCAGAACTGAAGAATTTGGTTGGAAAAGATACGCTCTAG 3000 0.4433 MDSDSDSDGSHVSATPPRRATPSPPPPQPPPPPQPPRVPSGKSRIRTKTSSSKKRPSAPDKTQSKHDPLPEPSHQLQDPFSLPTALPFQIRRSSDCDPAPPSTSQPLETVPAGFFSKSASFSKIRRHSISFEASGNEPLLDSTSNLGTNVGLDYARAFPEGEKGKCGRREEEGLGFGSRDKRKFGKIEEEEERGGLGAVSREKESFGKRGEAEEGFGVGVGSRVKGTSGKRQHPNLIGANAPLPAVKLRKCGGEGNFVKLNLSGGGKRRKFMNKGYKKSGRFSGGRRYTRSRGKVGRQGKEDQEELGFDDEEGLVTESGQKKQKRTCRASEVQLKLVDEAVSAAQAEPSDENLVNLLSLVYGYDSFRDGQLEAIKMVLTGKSTMLILPTGAGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPPVIRGGCLSSSQTSEEAAETLNQLRQGAVKVLFVSPERFLNEEFLSVISGMSGISLLVVDEAHCISEWSHNFRPSFMRLRASLLRKRLNIGTILAMTATATNTTLDAIMSALDIPCTNLIQKAQLRDNFHLSVSLLKNRMKDLLVLMKSSPFAEVQSIIIYCKFQSETDMISRYLNDNNISAKSYHGGMSSKERNYVQELFTSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPKSLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLMYRXXNYFFFLSYCQSEKSSCGRICSLIKESSSRKFDMKEEVMLTILTRLELGDVKYLYLLPQINATCNLTFHKTPPPMLAQRNSAVAVILKRSEYKQGLYVFDIPSVANDVGITAVELTNQLYNLKLTGEITYEMKDLAYCYKIVQVPTDFFSLSTAVTQWLSDVESCKVQKIDVMLNAANFAINLCDKMHGCSDNNHTPCLQTKILDYFAGVDDNNDSCKKIGQSSPFLRADIKVFLQSNSQAKFTPRAVARIMHGIASPAYPSTIWCRTHFWGRYTHIDFKVVMEAAKAELKNLVGKDTL 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05969 999 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 374 544 IPR014001 -
Arst3g05969 999 SMART helicmild6 595 676 IPR001650 -
Arst3g05969 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 694 IPR027417 -
Arst3g05969 999 MobiDBLite consensus disorder prediction 53 72 - -
Arst3g05969 999 MobiDBLite consensus disorder prediction 125 144 - -
Arst3g05969 999 MobiDBLite consensus disorder prediction 282 306 - -
Arst3g05969 999 MobiDBLite consensus disorder prediction 217 238 - -
Arst3g05969 999 MobiDBLite consensus disorder prediction 96 111 - -
Arst3g05969 999 NCBIfam RecQ family ATP-dependent DNA helicase 356 700 IPR004589 GO:0004386|GO:0006310
Arst3g05969 999 Gene3D - 333 543 IPR027417 -
Arst3g05969 999 MobiDBLite consensus disorder prediction 18 39 - -
Arst3g05969 999 Pfam Helicase conserved C-terminal domain 581 675 IPR001650 -
Arst3g05969 999 Pfam DEAD/DEAH box helicase 368 530 IPR011545 GO:0003676|GO:0005524
Arst3g05969 999 Gene3D - 544 739 IPR027417 -
Arst3g05969 999 CDD SF2_C_RecQ 552 685 - -
Arst3g05969 999 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 481 490 IPR002464 -
Arst3g05969 999 CDD DEXHc_RecQ4-like 354 547 - -
Arst3g05969 999 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 565 716 IPR001650 -
Arst3g05969 999 FunFam ATP-dependent DNA helicase Q4 334 544 - -
Arst3g05969 999 MobiDBLite consensus disorder prediction 1 119 - -
Arst3g05969 999 SMART ultradead3 362 558 IPR014001 -
Arst3g05969 999 PANTHER DNA HELICASE RECQ FAMILY MEMBER 340 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05969 Arst-Chr3 133281376 133288392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05969 585 677 Eukaryotic Initiation Factors Gene Family AT3G19760 36.559 3.92e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05969 K10730 - gmx:100811214 1106.66