Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05948 ATGGTGCAAATACAATCCAATAGTTCTTTCAGAGAATCTCTCAAGGCTCTTGAAGATGATATCCAACATGCCAACACACTGGCATCAGCACTCCCTAGAGATTATAATGGGAGCTATATCCAAATGAAATTATGTTACAGCCCTTTTGCTCCTCTTTTCTTGTCATTGATTGAGTGGTTGGATTTTAGTTGCACAGATGATATTCCCCATTGTTTGGGATTACTCCACATTCTTATATCCAATGTATACATTGATGGAATGCCATCTATTTCCTCAAAAGAAAGGATAGCCTCTCTAAGAGAATTCTATGCTGTAATATACCCTTCGCTCCGATTACTCGAAGGCGAGTTCAATGTGTCCAGAATCAGAGACCACAGAAGCAATTGCAGCCAAATTGTGAGCAGAAAAAGGCTTGAAAAGTTTCTTGATGAAGACCAAGAGGGAGATGATGAATGTGACATATGCATGGAGAAGAGCAGGAAGATGGTGCTTCCTAATTGTGTGCATTCCTTGTGCATTAGCTGCTTCCATGATTGGTATTTGAGATCAGAATCATGTCCATTTTGCCGTGGAAGCCTCAAAAGGGTTAGTTCTACAGATTTATGGGAGGTTATTGGAGACAGTGATGTAATTGACCGAGCTACACTTGCAATGGATAATATAAGACGTTTCTACCTTTTCATGGAAACTTTGACACTTAATATCCCTGATGCACATGTCTATGCATTTAACTACATGTTATGA 744 0.3952 MVQIQSNSSFRESLKALEDDIQHANTLASALPRDYNGSYIQMKLCYSPFAPLFLSLIEWLDFSCTDDIPHCLGLLHILISNVYIDGMPSISSKERIASLREFYAVIYPSLRLLEGEFNVSRIRDHRSNCSQIVSRKRLEKFLDEDQEGDDECDICMEKSRKMVLPNCVHSLCISCFHDWYLRSESCPFCRGSLKRVSSTDLWEVIGDSDVIDRATLAMDNIRRFYLFMETLTLNIPDAHVYAFNYML 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05948 247 ProSiteProfiles Zinc finger RING-type profile. 152 190 IPR001841 -
Arst3g05948 247 PANTHER RING FINGER PROTEIN 41, 151 8 243 - -
Arst3g05948 247 Pfam Zinc finger, C3HC4 type (RING finger) 149 195 - -
Arst3g05948 247 SMART ring_2 152 189 IPR001841 -
Arst3g05948 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 201 IPR013083 -
Arst3g05948 247 SUPERFAMILY RING/U-box 139 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05948 Arst-Chr3 133082157 133083921 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05948 143 194 C3H Transcription Factor Family AT5G01960 34.615 1.73e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05948 - - gmx:100805014 362.459