Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst3g05920 | ATGGAAGGACTCGTCAAAAAGGGTAAAAATTCTGCAAAGCCTTCCCTTTCTCCCGAAGGGTATCTCTCTCCTCCTTTAGCTTGGCAATTTCCTTCCTCAACTCTCCTTTTCAGATCCCAAACCAAAACTCTAGATTTATCGCAAAATCAAGATAACGACCAAACGGGAGAAAGGACTACCGATGCTCCCAACCGAGAGAGGATCATACTAGTGAACCCCTTCACACAAAGCATGGTTGTCATCGACGGCGCTTCAAGCCTCGAAGCTCTGTTTCGCGACATGGCCGTTAACAACAGCAGCAAAGCCGGAAGACCTCCAGCTACGAAGGAATCCATTGACGCCATGCCGAGCTTTGTAATCAAAGAAGGTGAAGTTGAAATAGGAGAGTGTGTTGTGTGTTTGGAGGATTTTGGTGTTGGTGCTTTGGTTAAGGAGATGCCATGTAAGCACAGGTTTCATCCGAATTGCATTGAGAAGTGGCTTGGGATGCATGGAACTTGCCCTGTTTGTATGTACGAGATGCCGGTTGAGGAAAAAGATGAAGGAAAGAAGAGGGATAGTGAAGGAGAAGAAGAACAAGAAGGAGGAGAAAGAGAGAGGAGAAAGACAGCGGCGAAGAATCTAGAGTTTTAG | 633 | 0.4629 | MEGLVKKGKNSAKPSLSPEGYLSPPLAWQFPSSTLLFRSQTKTLDLSQNQDNDQTGERTTDAPNRERIILVNPFTQSMVVIDGASSLEALFRDMAVNNSSKAGRPPATKESIDAMPSFVIKEGEVEIGECVVCLEDFGVGALVKEMPCKHRFHPNCIEKWLGMHGTCPVCMYEMPVEEKDEGKKRDSEGEEEQEGGERERRKTAAKNLEF | 210 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst3g05920 | 210 | MobiDBLite | consensus disorder prediction | 177 | 210 | - | - | |
| Arst3g05920 | 210 | SUPERFAMILY | RING/U-box | 129 | 175 | - | - | |
| Arst3g05920 | 210 | Pfam | Ring finger domain | 129 | 170 | IPR001841 | - | |
| Arst3g05920 | 210 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 177 | IPR013083 | - | |
| Arst3g05920 | 210 | SMART | ring_2 | 130 | 170 | IPR001841 | - | |
| Arst3g05920 | 210 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 55 | 175 | - | - | |
| Arst3g05920 | 210 | FunFam | E3 ubiquitin-protein ligase RNF181 | 95 | 177 | - | - | |
| Arst3g05920 | 210 | ProSiteProfiles | Zinc finger RING-type profile. | 130 | 170 | IPR001841 | - | |
| Arst3g05920 | 210 | MobiDBLite | consensus disorder prediction | 44 | 64 | - | - | |
| Arst3g05920 | 210 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst3g05920 | Arst-Chr3 | 132846230 | 132848626 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst3g05920 | 47 | 190 | C3H Transcription Factor Family | AT1G26800 | 54.861 | 1.74e-47 | 153 |