Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05919 ATGGAGGAACAAAAGAAACGCAGCATTCCGGTGCTGCCATGGATGCGAGACCCTCTAGACCTTACTCTCTTCCAACAGATTCCTCTCCATACCCTCCCTTCTCTCCACCCTAAGTTGAAATTATCACTGGAAAACATGGGGATTTCCAACCTGTTCCCGGTGCAAGTTGCGGTATGGCAAGAAACCGTTGGGCCTGGGAAATTCCACCGAGACCTCTGCGTTAACTCCCCCACTGGCAGTGGCAAGACCTTGGCCTACGCGCTCCCCATCGTACAGTTGCTCTCCACACGCGTCGTCACGTGCCTACGCGCATTGGTCGTTGTCTCGCCGGAATGTGAGTTCGGGATTTCTTACGATCCGGAAGAGGTTGCATTTCGTGTTCGGAGACGGTTGAGGAGTAAGGTAGATATATTGGTGGCAACCCCCGGAAGATTGATGGATCATATCAATACCACCAAAGGCTTCACTCTTGAGCATCTTCAATATCTTGTGGTTGATGAAACGGATCGGCTACTCCGTGAGGCCTACCAGTCATGGCTACCTGCTGTGCTTGAATCGGTGCAGTTGAATGAGGATAACAGTTTTGAACCCAGTGATTCGTTTTTACCTTGTTCTATGGGTGTGTTAACAACCAGAAGAAGATGTGGAGTTGAAAGGGGTTTCAAGGATAAGCCCTACCCTAGGCTGGCAAAGATTGTCCTGTCTGCGACAATAACTCAGGACCCAGGCAGGCTTGTTCAGCTTGAGTTGCATCACCCTTTGTTCCTGAGAGCTGGGCCAATGCGTTATCGACTCCCAGAAAATCTACAATCCTTCAAATTGATCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTAAAATCACTAGAAGGAGAAAAATGCATAATTTTTACAAAATCTGTGGAATCTACACATCGTCTCTGCAAATTGCTTAATTGTTTTGGAGATCTGCAAATTGATATCAAGGAGTACTCTGGTCTTCAGCATCAACGTGTAAGAAGTAAGACCCTGAATAATTTTCGGAAAGGCGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTGGAAGGTGTAAGAAATGTCATTAACTATGACATGCCCAAATACGTGAAGACCTACGTTCATCGGGCTGGTAGGACTGCCCGGGCTGGCCAGACTGGGCGCTGCTTCACATTGATGTCCAATGATGAGGTACGACAATTTAAGAAGTTGATGCAAAAGGCTGAGGCTAGTTCTTGCCCCGAGCACATCATTCAATCCAGTTTGATTGAAGCACTGCACTCTACCTATGAATCAGCATTGAAAAAATTCAAGGAGAAGATTTCGAAGGCACGAAAGAAGGCAAATGATTAG 1377 0.4655 MEEQKKRSIPVLPWMRDPLDLTLFQQIPLHTLPSLHPKLKLSLENMGISNLFPVQVAVWQETVGPGKFHRDLCVNSPTGSGKTLAYALPIVQLLSTRVVTCLRALVVVXSPECEFGISYDPEEVAFRVRRRLRSKVDILVATPGRLMDHINTTKGFTLEHLQYLVVDETDRLLREAYQSWLPAVLESVQLNEDNSFEPSDSFLPCSMGVLTTRRRCGVERGFKDKPYPRLAKIVLSATITQDPGRLVQLELHHPLFLRAGPMRYRLPENLQSFKLICERKVKPLYLVALLKSLEGEKCIIFTKSVESTHRLCKLLNCFGDLQIDIKEYSGLQHQRVRSKTLNNFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYVKTYVHRAGRTARAGQTGRCFTLMSNDEVRQFKKLMQKAEASSCPEHIIQSSLIEALHSTYESALKKFKEKISKARKKAND 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05919 459 Coils Coil 436 459 - -
Arst3g05919 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 175 IPR027417 -
Arst3g05919 459 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 285 443 IPR001650 -
Arst3g05919 459 SMART ultradead3 47 273 IPR014001 -
Arst3g05919 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 415 IPR027417 -
Arst3g05919 459 SMART helicmild6 309 393 IPR001650 -
Arst3g05919 459 PANTHER RNA HELICASE 35 436 - -
Arst3g05919 459 CDD SF2_C_DEAD 271 401 - -
Arst3g05919 459 Pfam DEAD/DEAH box helicase 53 108 IPR011545 GO:0003676|GO:0005524
Arst3g05919 459 Gene3D - 117 260 IPR027417 -
Arst3g05919 459 Gene3D - 20 113 IPR027417 -
Arst3g05919 459 Pfam Helicase conserved C-terminal domain 282 393 IPR001650 -
Arst3g05919 459 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 257 IPR014001 -
Arst3g05919 459 Pfam DEAD/DEAH box helicase 129 243 IPR011545 GO:0003676|GO:0005524
Arst3g05919 459 Gene3D - 270 459 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05919 Arst-Chr3 132831608 132836392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05919 57 415 Eukaryotic Initiation Factors Gene Family AT3G19760 22.135 7.15e-20 89.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g05919 3 132831608 132836392 Arst3g05919 3 132831608 132836392 ECH