LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g05872	ATGATTGGAGGTAAGGAACTTCGTAATGGTGGTGTTGACTCTGCGGATGAAAGCTCAAGAAGCAAGCTCACAAGGCCGAATTTTGAGCCCAGCAGGGAGTACCCGGATAAGAAAGGTGTTGAATTTCTGAGAGATTCAGAGATGGGTGGTGTTCACTCAAAGCCCACAAGCAGCAGCATGGTTGGTGGTGCCAGCTCAGGATTGCAAGAACTCACCCTCAGCTACCTCTGTGATGCACAAGGGCTGGGTCTTGCTGCTGATAAGGATATTCCTATTCCTGGTAAGAGCTTATTGCTGAATAATCATTCTTTAGAAAAAGTTGTTAGCCACAAGGGCAAAGAGATTCTTGTTTCCGAGAATTCAAATCATCTTGATGGTGGTAAATTTGTTGAAAGAGATTTCTTGAGCCTGAGTGATACCAGAGAGAATAACTCCTCAAAGCGATCGGTTGAGGAAGAAGAAGAGGAGCAAGAGAGTAATAGGGAGAAGAAGCCAAGGCTTGAGACACTGAATCTCTCTCTTGCTTTGCCTGATGTCTCACTCTCTCTCACCGCTTCAAACGCCTTACAAAACGGTGCTGATCAGCAACAACCACAACCGCTTCGGCCTAAACCTACCAGGCCCTCAACTACAACATGGTCTAATAATGATTGCACAGCAACAGCTTCTTTGTCTTACTCTTACTCTCACCCTTTCTCACACAACCCAAGTTGCTCGCTTACCCGCAATTCAACTGATAATTTTGACTACTCTGTGAGTAAGGATGACCAAATTTGGAATTGTGGGGAGGGGACTAACGGTTCTGTTCACAGTAGGTTCAAGCCAATTGGAGATGGGGTTGGGTTTTCCAATCATGGTGGTGGTATTAGCTCCTTTATGCAGGGAAATAGCCAGTTTAAGACTACTAGTTCGGATAATCATTCCTTTTTCCCTTCTGAATTGCCTGCCAGACCAAGATTTGAAGCTCAATCTGGGGACTCAAGGGGTAGGAATTCCGAGAATGTGAGATTCTTGGAAGGGTTAGATGGTGGGGGGAAGATGAAGAAGCTCTCGAGGCCTGAGAGGATCCTGAGGGAAGTTGTTTCTGAGTCTGTTCCCGCCGCAGCACTGATGATTCAGGAGCTTGCTGATGAAGTCATAGCTTCAACCAAGGAATACCTGAAGAATCTCATTGAGAAGCCTGACAAGAAAGATGAATTGGTCAGCCTACAAAGCAGGCTTGAAAGGAGATCTGACCTCTCCAAAGAGACTCTTTCCAAGTGCCATAAGGTGCAGTTGGAGATTCTGGTTTCTGTCAAGATGGGGCTTGCAAACTTCTTATCTGGTAAAATTCAATTATCTGAAATGGTAGAGGTTTTCTTGTATAGGAGATGTAGGAATGTTAACTGCAAGAGTCTGCTTCCTGTTGATGACTGTGACTGCAAGATTTGCTCAGGGAATAAGGGATTTTGTAGTTCTTGTATGTGTCCTATTTGTTTGAACTTCGATTGCGCAAGCAATACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCCCATTGGTGCCATGCTGTCTGTGGCATTCAGAGGAACCTCATCAAGCCCGGGCCGAGCTTGAAGGGACCTGCGGGGACCTCAGAAATGCAGTTTCATTGTATTGGCTGTGGACATGCTTCTGAAATGTTTGGGTTTGTTAAGGATGTGTTCATGTGTTGTGCAAAGGATTGGGGACTTGAAACCTTGATGAAGGAGCTCGACTGTGTGAGGAAGATTTTTAGGGGAAGTGAAGACCGTAAAGGGAAAGAATTGCATGTCAAAACTGATGACATGCTGTTAAAGCTTCAAACTAAAATGGCTTCTCCTTCGGATGCCTGCAATTATATCACACAATTTTTCAACTATGCAGATAACTTGCCAGACTTTCCCCTTTCTGCCATATCTGCAAAGGATATAGCATCATCTCAATCCAACATTACGAAAGACACACCATCTCTTCCAAAAACTAGTTCCTTAATGCCTAAATATGCTTATGACATGAGCTATTCTAGGCCACATTCTGGTGCCTTGCCAAATGATCTTCATCAAAAGGACTTCAAAGCTTCCATATTAAGTGAACTAAAAACTGAGGCTGATTTCCAACTGGGGGCTTTGCTAAGGAAAGGTGGACTTGACAGCTTGGAGAGCATTGTGCGGATAAAGGAGGCGGAAGCGAAAATGTTTCAGACGAAGGCGGATGAAGCAAGGAGGGAGGCAGAAGGGTTCCAGAAGATGATCAGGACAAAGACCGCACAGATGGAAGAAGAGTATGCCGAAAAGCTAGCCAAACTGTGTTTGCATGAGACTGAGGAAATGAGGAGGAAGAAACTAGAAGAACTCAAAGTCTTGGAAGGTTCCCATTATGATTACTATAAGATGAAGAAGAGAATGCAAGATGAGATAGATGGTTTATTGGAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA	2463	0.4434	MIGGKELRNGGVDSADESSRSKLTRPNFEPSREYPDKKGVEFLRDSEMGGVHSKPTSSSMVGGASSGLQELTLSYLCDAQGLGLAADKDIPIPGKSLLLNNHSLEKVVSHKGKEILVSENSNHLDGGKFVERDFLSLSDTRENNSSKRSVEEEEEEQESNREKKPRLETLNLSLALPDVSLSLTASNALQNGADQQQPQPLRPKPTRPSTTTWSNNDCTATASLSYSYSHPFSHNPSCSLTRNSTDNFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVGFSNHGGGISSFMQGNSQFKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENVRFLEGLDGGGKMKKLSRPERILREVVSESVPAAALMIQELADEVIASTKEYLKNLIEKPDKKDELVSLQSRLERRSDLSKETLSKCHKVQLEILVSVKMGLANFLSGKIQLSEMVEVFLYRRCRNVNCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWVGCDVCSHWCHAVCGIQRNLIKPGPSLKGPAGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLMKELDCVRKIFRGSEDRKGKELHVKTDDMLLKLQTKMASPSDACNYITQFFNYADNLPDFPLSAISAKDIASSQSNITKDTPSLPKTSSLMPKYAYDMSYSRPHSGALPNDLHQKDFKASILSELKTEADFQLGALLRKGGLDSLESIVRIKEAEAKMFQTKADEARREAEGFQKMIRTKTAQMEEEYAEKLAKLCLHETEEMRRKKLEELKVLEGSHYDYYKMKKRMQDEIDGLLERMEATKQQWV	820

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g05872	820	MobiDBLite	consensus disorder prediction	297	332	-	-
	Arst3g05872	820	CDD	PHD_OBE1_like	488	547	IPR047578	-
	Arst3g05872	820	MobiDBLite	consensus disorder prediction	10	48	-	-
	Arst3g05872	820	Pfam	Coiled-coil region of Oberon	688	809	IPR032535	-
	Arst3g05872	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	410	425	IPR004082	-
	Arst3g05872	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	371	393	IPR004082	-
	Arst3g05872	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	495	515	IPR004082	-
	Arst3g05872	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	568	587	IPR004082	-
	Arst3g05872	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	716	736	IPR004082	-
	Arst3g05872	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	449	470	IPR004082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g05872	Arst-Chr3	132160394	132163458	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g05872	458	587	PHD Gene Family	AT5G57380	26.718	2.83e-08	55.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g05872	-		-	gmx:100820216	1271.91

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