Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05790 ATGGCTTCTCCAATGGGGTCATCATCAACGGCTGGTGGTGCTACTGATGGTACTGATGATGAGGGGCAAGATCGTCCTCAAAATTCTCGAAGGTTTTACCATCGTCACACTCCCCATCAGATAGCAAAGCTTGAGGAAGCGTTCAACGCATGTGCACATCCAAGTGATAGCATGCGGCGACAACTAGGCACAGAACTAGGGCTTGAACCCAGACAAGTCAAATTTTGGTTTCAGAATAGGAGGACCCAAGCAAAGGCTCAAGCTGATAGATCAAATAACTGTGCTCTTCGGCGAGAGAATGAGAGAATGATGGCAGAAAACTTGATGTTCAGAGAGTCCTTGAAGAGTGTAGTTTGCATAACTTGTGGTGGTCCAACCATAAGGGACGATGATTGCCACATTCGCTTGGAACAATTCAAGTTGGAAAATGATTTTCTCGTACAAGAGTATAGGAAAATGGGAGAGCTTCTTGCAAGTTACAACATCATAGGTGCAGATCAAGTAGTGTCCCCTCTGCAATTATCATCAGTGTTATCTTCTCTGGCCATCAGTGGTAGCATTACTACTCCTACTCCTACTCCTACTCCTACTCCTACCCCAGCAGCTGCAATACCATGTTTGATTGATCCTCAGATTGAAGCTTCTCTCTGCCAACGCTTCCATTCACTCTGCCGCCAAAACACTACTCTTATTCCTCCTCAAGGATCTCAAAGTAGCAATAGTATTATTCGTCCTTTTAATGGCGATCGTGATCATCAAGATATGATGCCTGCTCAATCTGCTGCTGCTACTCCGACTGCCGTCGCTGCTTCTGAAACCCAAATTGGTACGCCGGCTGCGGCGGTAGTGAGCTTCTTCACAGAGGAGGAGATAGTAAGAATGAAAGAGGCGGCGACTAAAGCCGTGGACGAAGTAGCGAGGCTTCTGCGGATGAACGAGCCTTTCTGGTTTAGGTCAACGGTTGATGGAAACTTCATTCTTCAGCGTCAAAGCTACGACGGCGTTTTCCACAATGTTGGCTTGAAGTGTGAAGCACGCAGAGAGGCATCAAAAGATTCACGAGTGGTGGCTATGAGCGGCAGGAAATTGGTTGATATGTTCTTAGATTCGGAAAAATGGGTTTCCCTTTTCCCAACAATGGTTAAAAAAGCAGACACAATCGAAGTACTCAACACCGGTTTGCCACAGACCCGAAGTGGAGCCTTGCAACTGATGTATGCAGATATACATATTCTTTCACCGTTACTTAGATCTCGGGAATTCTTTTTCCTGCGGTACTGTGTGCAAGTTGATGTAGGTGCATGGATCATAGCAGATGTCTCATTTGATTCCTCCAGATTCCTTCATTCCCTCACTTGGAAGCTTCCCTCTGGATGCTTAATCCACGACATGAACGATGGATATTCCACCATTACTTGGGTGGAACATGTGGAAATAAGTGACAGTATCCAAACGAATCCGATTTTTAGAGACCTAGTTTGTAGCAACAGTGCATTTGGAGCAGAAAGATGGATTTTGACACTCGAAAGGATGTGCGAGAGAATTGCATTCGCCTCAATGAACATGATGCCTAGTTGTGACAGTGGAGTGATTGCTTCACCTGAAGGACGAAAGAATGTGATGGAATTTTCTGAGAGGATGGTAAAGCTCTTTTGTGGGTCTCTGGACATGACAGGTAACATGGAGTTGCAATATGGGAAGAACAACAATGGTGTAAGAGTTGGTATTCGAAGAAGTATAGAGGCGGGTGTGCCTAAGGGCTTGATTGTCACTGCATCTACCTCCCTTTGGCTTCCTCTCTTGCCCCAAACACTCTTTAACTTTTTCAAAGATCCATCAACTAGACATCAGTGGGATGTTTTGTGCCATGGAAATCCAGTGACTCAGATTCAGCGCATCTCAAATGGAACTTTTTCTGATAACTTTACAACAATTCTTCGGCCTTATATCCCGACGGAGAACAACACGCTTCTTCTCCAAGAATGCTGCACGGATTTCTTGGGAAGCGTGGTGGTGTATGCTCCGGTTGATGTTGGAACAATAACTGCGGCAATCAACGGAGAGGACACCACCACGATGCCTATTCTCCCCTCCGGCTTCACCATATGCGGAGATGGATCTCCTCCGCGAGGAGCTTTCTTTGGCTGTGCGCTCCCTGAATCGAGACATTACGGTGGCTCCATACTAACGGTGACCGTACAGGTGCTAGTTAGCAACCAAAATGCGGTGGGGCAGTTCAACATGAACACCGTTGATGCTGTCAATGGACTCGCAGCCACCACTGTCAAGAAAATTAAAGCCGCCTTCAAGTGTCCCTGA 2319 0.4636 MASPMGSSSTAGGATDGTDDEGQDRPQNSRRFYHRHTPHQIAKLEEAFNACAHPSDSMRRQLGTELGLEPRQVKFWFQNRRTQAKAQADRSNNCALRRENERMMAENLMFRESLKSVVCITCGGPTIRDDDCHIRLEQFKLENDFLVQEYRKMGELLASYNIIGADQVVSPLQLSSVLSSLAISGSITTPTPTPTPTPTPAAAIPCLIDPQIEASLCQRFHSLCRQNTTLIPPQGSQSSNSIIRPFNGDRDHQDMMPAQSAAATPTAVAASETQIGTPAAAVVSFFTEEEIVRMKEAATKAVDEVARLLRMNEPFWFRSTVDGNFILQRQSYDGVFHNVGLKCEARREASKDSRVVAMSGRKLVDMFLDSEKWVSLFPTMVKKADTIEVLNTGLPQTRSGALQLMYADIHILSPLLRSREFFFLRYCVQVDVGAWIIADVSFDSSRFLHSLTWKLPSGCLIHDMNDGYSTITWVEHVEISDSIQTNPIFRDLVCSNSAFGAERWILTLERMCERIAFASMNMMPSCDSGVIASPEGRKNVMEFSERMVKLFCGSLDMTGNMELQYGKNNNGVRVGIRRSIEAGVPKGLIVTASTSLWLPLLPQTLFNFFKDPSTRHQWDVLCHGNPVTQIQRISNGTFSDNFTTILRPYIPTENNTLLLQECCTDFLGSVVVYAPVDVGTITAAINGEDTTTMPILPSGFTICGDGSPPRGAFFGCALPESRHYGGSILTVTVQVLVSNQNAVGQFNMNTVDAVNGLAATTVKKIKAAFKCP 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05790 772 CDD homeodomain 30 87 IPR001356 GO:0003677
Arst3g05790 772 FunFam Homeobox-leucine zipper protein HDG1 16 103 - -
Arst3g05790 772 SMART HOX_1 29 91 IPR001356 GO:0003677
Arst3g05790 772 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Arst3g05790 772 ProSiteProfiles START domain profile. 287 517 IPR002913 GO:0008289
Arst3g05790 772 Gene3D - 295 493 IPR023393 -
Arst3g05790 772 Pfam START domain 299 514 IPR002913 GO:0008289
Arst3g05790 772 SUPERFAMILY Bet v1-like 288 515 - -
Arst3g05790 772 SUPERFAMILY Homeodomain-like 13 86 IPR009057 -
Arst3g05790 772 SMART START_1 296 514 IPR002913 GO:0008289
Arst3g05790 772 SUPERFAMILY Bet v1-like 541 739 - -
Arst3g05790 772 Pfam Homeodomain 30 85 IPR001356 GO:0003677
Arst3g05790 772 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 28 769 IPR042160 -
Arst3g05790 772 MobiDBLite consensus disorder prediction 1 16 - -
Arst3g05790 772 CDD START_ArGLABRA2_like 292 513 - -
Arst3g05790 772 Gene3D - 16 105 - -
Arst3g05790 772 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05790 Arst-Chr3 131506278 131516965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05790 30 772 Homeobox Transcription Factor Family AT1G73360 37.533 8.16e-163 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst3g05790 START 1.1e-25 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05790 K09338 - thj:104821159 557.37