LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g05778	ATGGCTTCCTTCACAGTTGGTCCTCATCATCGCCATTTGTCACATGACTCTGATGAGGTTCGCCCTCCTACTCGACAATCTGCTTCATCGAAAGTACAATGCCGAGTTTGTGGTGATGAGATTGGATATAAGGAAGATGGAGGGTTATTTGTGGCATGTTATGTGTGTGGCTTCCCTGTTTGTCGACCCTGCTATGAGTATGAGAGAAGTGAAGGCACACAGTGCTGTCCTCAGTGCAACACTCGCTATAAGCGTCACAAAGGATCTCCTAGAGTAGTAGGAGATGAAGAGGAGAACTTTGATGCAGATGATTTTGATGATGAATTTCAGATTAAGACTGGCCATGATCATGATGATGTTAATCATGCGGAAGATAAAGACAAGAAGGAACAGCAGTGGCATCCCAATGCCACCGGCAAGGACATTGAAGGGGACAAAGAATTCTACAGCAATGCAGAGTGGGAAGAAAGGGTAGAGAAATGGAAAGCCAGACAAGAAAAGAAAGGCCTCCTAAACAAAGAAGAAGGAAAAGACGATCAAGATGAAGAAGAAGATGAGTACCTTTTGGCTGAAGCTAGACAACCATTGTGGCGTAAAGTTCCAATATCTTCAAGCCTGATCAACCCATACCGGATAGTGATTGTGATGAGGCTGGTGATTCTGGCTTTCTTCTTGCACTTCCGCATCATGACTCCAGCACATGATGCTTTCCCACTGTGGTTAACATCTGTGATATGTGAGACATGGTTTGCATTCTCATGGATCCTTGACCAGTTCCCTAAATGGTTCCCCATCACGCGCGAGACTTACTTGGACCGCTTGTCCATAAGGTTCGAGCGCGAAGGGGAACCAAACAAGCTTTCCCCTGTTGATGTCTTTGTCAGTACTGTGGACCCTTTGAAGGAACCTCCAATCATAACAGCCAACACCGTCCTTTCCATCCTCTCCGTCGATTACCCGGTCGAAAAGGTTTCCTGCTATGTATCAGATGATGGTGCTTCTATGCTTCTCTTTGACACACTCTCTGAAACCTCTGAGTTTGCAAGAAGATGGGTTCCATTTTGCAAGAAGCATAATATTGAGCCAAGAGCTCCTGAGTTCTATTTCTCTCAGAAAATCGATTACTTGAAAGACAAGGTACATCCTATGTTTGTCAAGGAACGCAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTGAAGATTAATTCTTTGGTGGCAAAGGCTCAGAAGAAACCAGAGGAAGGTTGGGTGATGCAGGATGGAACACCATGGCCTGGGAATAACACTCGTGATCATCCAGGAATGATTCAGGTGTATTTGGGAAGTGCTGGTGCACTTGACGTGGAAGGCAAGGAACTGCCGCGACTTGTGTATATTTCGCGTGAAAAACGTCCTGGCTATCAACACCACAAAAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCTTTCATGTTGAATTTGGATTGTGACCACTACATCAACAATAGCAAGGCTATAAGAGAAGCTATGTGCTTCTTAATGGATCCTCAGCTTGGGAAGAAGCTCTGCTATGTCCAATTCCCACAAAGGTTCGATGGTATTGATCGACATGATAGATATGCCAATCGCAACATTGTATTCTTCGATATCAATATGAAAGGCCTAGATGGGATCCAAGGTCCAGTGTATGTTGGTACTGGAACTGTTTTCAATAGGCAGGCATTGTACGGATATGATCCACCGGTGTCCGAGAAAAGGCCGAAGATGACGTGTGATTGTTGGCCTTCCTGGTGCTGCTGCTGTTGTGGTGGTTCAAGGAAATCAAAGTCAAAGAAGAAATCTGGTGGAGGAGGTCTCTTCAGTAAATTGTACAAGAAGAAAAAGATGAAGGGGAAGAACTATGTTAGAAAAGGGTCTGAGCTCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTTTGATGAGCTAGAGAAATCATCTCTAATGTCTCAGAAACAGTTTGAGAAGCGATTCGGGCAGTCGCCTGTTTTCATTGCTTCCACTTTGATGGAGAATGGTGGACTTCCTGAAGGCACCAATTCTCAAAATCTTATAAAGGAGGCCATTCATGTTATAAGTTGTGGCTATGAAGACAAAACGGAATGGGGAAAAGAGATTGGGTGGATTTATGGCTCAGTGACAGAAGATATCTTAACAGGGTTCAAAATGCACTGTAGAGGGTGGAAATCAGTGTACTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCACCAATAAATCTATCAGATAGGTTGCACCAAGTTTTGAGATGGGCTCTTGGTTCTGTTGAAATTTGCCTTAGTCGCCATTGTCCCCTGTGGTATGGTTATGGAGGAAAGCTTAAGTGGCTAGAAAGGATGGCTTATACCAACACCATAGTATATCCATTCACTTCCATTCCTCTCCTTGCATATTGCATACTACCAGCTGTGTGTCTTCTTACTGGAAAATTCATCATTCCCACCTTGACAAACCTTGCTAGTGTTTGGTTCATGGCTCTATTTATATCCATCATCCTAACCGGTGTCCTTGAGCTTCGGTGGAGTGGAGTTAGCATCGAAGATTGGTGGCGAAACGAGCAATTTTGGGTGATTGGAGGAGTTTCGGCACACCTTTTTGCTGTGTTCCAAGGCCTCCTGAAAGTTCTTGGAGGAGTAGACACCAACTTCACAGTTACAGCAAAAGCAGCAGATGATACTGAGTTCGGAGAGTTATACCTTTTCAAGTGGACAACACTTCTGATCCCACCAACCACCCTCATAATATTGAACATGGTTGGGGTTGTGGCTGGTGTCTCTGATGCCATTAACAATGGATATGGCACATGGGGACCTTTATTTGGGAAGCTATTCTTTGCATTTTGGGTTATTGTTCACTTATATCCTTTCCTAAAGGGTCTCATGGGAAAGCAAAACAGGACTCCAACCATTGTGGTTTTATGGTCAATTCTGCTAGCATCCATTTTCTCATTGATTTGGGTGAGGATCGATCCATTCTTGCCTAAGCAAACTGGTCCAATACTCAAGCAGTGTGGAGTTGAATGCTAA	3099	0.4414	MASFTVGPHHRHLSHDSDEVRPPTRQSASSKVQCRVCGDEIGYKEDGGLFVACYVCGFPVCRPCYEYERSEGTQCCPQCNTRYKRHKGSPRVVGDEEENFDADDFDDEFQIKTGHDHDDVNHAEDKDKKEQQWHPNAXTGKDIEGDKEFYSNAEWEERVEKWKARQEKKGLLNKEEGKDDQDEEEDEYLLAEARQPLWRKVPISSSLINPYRIVIVMRLVILAFFLHFRIMTPAHDAFPLWLTSVICETWFAFSWILDQFPKWFPITRETYLDRLSIRFEREGEPNKLSPVDVFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVHPMFVKERRAMKREYEEFKVKINSLVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKSGGGGLFSKLYKKKKMKGKNYVRKGSELMFDLEEIEEGLEGFDELEKSSLMSQKQFEKRFGQSPVFIASTLMENGGLPEGTNSQNLIKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEICLSRHCPLWYGYGGKLKWLERMAYTNTIVYPFTSIPLLAYCILPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGTWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC	1033

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g05778	1033	SUPERFAMILY	RING/U-box	28	100	-	-
	Arst3g05778	1033	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	304	823	IPR029044	-
	Arst3g05778	1033	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	194	1000	-	-
	Arst3g05778	1033	FunFam	Cellulose synthase	15	108	-	-
	Arst3g05778	1033	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	194	1000	-	-
	Arst3g05778	1033	FunFam	Cellulose synthase	408	582	-	-
	Arst3g05778	1033	MobiDBLite	consensus disorder prediction	92	144	-	-
	Arst3g05778	1033	Pfam	Zinc-binding RING-finger	31	99	IPR027934	-
	Arst3g05778	1033	Coils	Coil	389	409	-	-
	Arst3g05778	1033	MobiDBLite	consensus disorder prediction	106	144	-	-
	Arst3g05778	1033	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	405	583	IPR029044	-
	Arst3g05778	1033	Pfam	Cellulose synthase	291	1026	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Arst3g05778	1033	Pfam	Cellulose synthase	291	1026	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Arst3g05778	1033	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	15	108	IPR013083	-
	Arst3g05778	1033	MobiDBLite	consensus disorder prediction	1	25	-	-
	Arst3g05778	1033	CDD	mRING-HC-C4C4_CesA	34	82	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g05778	Arst-Chr3	131417064	131421587	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g05778	2	1033	Cell Wall Biosynthesis	AT5G17420	65.981	0.0	1428

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst3g05778	3	131417064	131421587	Arst3g05778	3	131417064	131421587	ECH