Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05643 ATGGTGAAGATCTCGCTTGGCGGATACGACGATGGGGAAGGACCTAGCAACCGGATCCAGAAGCGACTCAGGATGGAACAAGAAGATGGCCAAGCAAGCAGAAACGAAAAGGAGGTGCATGAAGGAGATGGCGGCGAGGCTAGAAGTGCAGAGCATGATGAAAACCCTGTTGGATCTGTAAGCGACGATAAGGATAGGTCTATTTCTGTGACTATCATCGATCCCGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGACTTCCCCTGTTTTCCAGTGTGAGAATGGTCATATTGCTTGCTCTAATTGCTGTGCCAGACTTGGGAACAAGTGTCCCATGTGCTCAATGCCCATTGGTTATAACCGCTGCAGAGCTATTGAGAAGGTGCTGGAATCTATTAAAATATCATGCCTGAATGCAAAATATGGTTGTAAACATATGTTTAGTTACAGTAAAAAAAATGAACACGAGAAGGAATGTAACTTTCTGCCATGTTTATGCCCGCATTCAGGTTGTGACTTTCTTGCTTCATCTGAGGAGTTATCCCTCCACTTTAGCCATAGGCATATACATTCTGGAATACAGTTTACATACGATAAATTTTTCACTGTCTTCTTAAATCTTGATCACAAAACAATTGTTCTTCAAGAGAAGAATGATGCTAATCTCTTTGTTATTCACAATAACCATGAGCTTCTAGGGAATTTAATCCATATAACTTGCATCGGCCCCAAATCCAAGACAGGGTTTCATTATGATATCTTGGCTAGGTCCCAGGGAACCTCTCTAATATTGCAATCTTATACCAAGATTGTTCAAGGTCACTTTGCTGATGCTCCTTCAGCAGGGATGCTTTTGATTCCTTCTGATTTTTTTGGTTCCGGACAAATCAAGCTGGATATTCGCATAAGGTCATGA 921 0.4213 MVKISLGGYDDGEGPSNRIQKRLRMEQEDGQASRNEKEVHEGDGGEARSAEHDENPVGSVSDDKDRSISVTIIDPDVLDCCICYEPLTSPVFQCENGHIACSNCCARLGNKCPMCSMPIGYNRCRAIEKVLESIKISCLNAKYGCKHMFSYSKKNEHEKECNFLPCLCPHSGCDFLASSEELSLHFSHRHIHSGIQFTYDKFFTVFLNLDHKTIVLQEKNDANLFVIHNNHELLGNLIHITCIGPKSKTGFHYDILARSQGTSLILQSYTKIVQGHFADAPSAGMLLIPSDFFGSGQIKLDIRIRS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05643 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 186 IPR013083 -
Arst3g05643 306 SUPERFAMILY RING/U-box 79 122 - -
Arst3g05643 306 MobiDBLite consensus disorder prediction 15 61 - -
Arst3g05643 306 Pfam Seven in absentia protein family 123 221 IPR018121 GO:0005737|GO:0006511|GO:0007275
Arst3g05643 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 31 305 IPR044286 -
Arst3g05643 306 CDD RING-HC_SIAHs 78 116 - -
Arst3g05643 306 MobiDBLite consensus disorder prediction 1 64 - -
Arst3g05643 306 ProSiteProfiles Zinc finger RING-type profile. 80 116 IPR001841 -
Arst3g05643 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 123 IPR013083 -
Arst3g05643 306 SUPERFAMILY TRAF domain-like 133 305 - -
Arst3g05643 306 ProSiteProfiles Zinc finger SIAH-type profile. 133 191 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05643 Arst-Chr3 130451749 130453495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05643 76 304 C3H Transcription Factor Family AT2G41980 27.755 3.47e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05643 K04506 - gmx:100797881 431.024