Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05594 ATGTCAGACGTGGAAGAATATCGCTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTTGGCAAGCTTGTTGAAGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGCATGGATTTAGATGGGCGAACTATCACTGTAGATAAAGCTCAGCCTCAACAAGGATCGGGTAGAGATGATGGTGACCGCCACCGTGATCGTGGTCGAGATCGTGACCGTGATCGCGATCGTAACAGAGATTATGGAGGCGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGAAGAGGAGGAAGGTATGGTGGCAGGGAAGGTGGTAGACATGGTGGAAGTGGTTATGGTCCTGATAGAAATGCAGATCGTTCTTCCGGCGGACGCAGCAGGGATGCTGGCAGGGATGGAGATTCAGGAAATGATCGATACTATCGTGATCGTGCTGGACCATATGAACGACGAGGATCAGGAGGTGCTCGTTAA 621 0.4767 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSGRDDGDRHRDRGRDRDRDRDRNRDYGGGRGSNGGECFKCGKPGHFARECPSEGGRGGRYGGREGGRHGGSGYGPDRNADRSSGGRSRDAGRDGDSGNDRYYRDRAGPYERRGSGGAR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05594 206 Gene3D - 116 177 - -
Arst3g05594 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Arst3g05594 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Arst3g05594 206 CDD RRM2_NsCP33_like 8 83 - -
Arst3g05594 206 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 203 - -
Arst3g05594 206 Pfam Zinc knuckle 124 140 IPR001878 GO:0003676|GO:0008270
Arst3g05594 206 FunFam Glycine-rich RNA-binding protein RZ1A 1 120 - -
Arst3g05594 206 MobiDBLite consensus disorder prediction 76 206 - -
Arst3g05594 206 SMART rrm1_1 8 81 IPR000504 GO:0003723
Arst3g05594 206 SUPERFAMILY Retrovirus zinc finger-like domains 107 144 IPR036875 GO:0003676|GO:0008270
Arst3g05594 206 Gene3D - 2 103 IPR012677 -
Arst3g05594 206 MobiDBLite consensus disorder prediction 88 115 - -
Arst3g05594 206 ProSiteProfiles Zinc finger CCHC-type profile. 125 140 IPR001878 GO:0003676|GO:0008270
Arst3g05594 206 SUPERFAMILY RNA-binding domain, RBD 4 116 IPR035979 GO:0003676
Arst3g05594 206 MobiDBLite consensus disorder prediction 169 199 - -
Arst3g05594 206 SMART c2hcfinal6 124 140 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05594 Arst-Chr3 130058699 130060998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05594 10 93 Eukaryotic Initiation Factors Gene Family AT1G22760 35.714 2.13e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05594 - - gmx:100815224 273.478