Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05587 ATGGGGGATAGCAATAATGTCAATCTTCCACCGGGGTTTCGATTTTATCCCACTGATGAAGAGCTTGTAGTCCATTTCCTTCAGAGAAAAGCAGCACTTCTACCTTGCCACCCTGATGTCATTCCTGATCTTGATCTCTACCCTTTTGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGGAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGCCAATGGTTATTGGAATCCAATGGGAATTGAAGAGGCAGTGGTTTCAAACTCAAGCAACAGGAGAGTTGGTATCAAGAAATTTTATGTGTTCTATGTTGGAGAAGCCCCTCATGGTAACAGAACCAATTGGATCATGCAAGAGTATCGTCTTTCAGATTCTGCAGCATCCTCTAGCAGATCATCAACCAAAAGAAAATCACAACCAAAAACAGATCATAGTAAATGGGTGGTATGTAGAGTTCATGAAAGTGATGAAAATGATGATGATGGTGATGGTGATGGAACAGAACTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAGTAAGCTTGCCAAATTAG 588 0.415 MGDSNNVNLPPGFRFYPTDEELVVHFLQRKAALLPCHPDVIPDLDLYPFDPWELDGRALAEGNQWYYYSRRTQNRVTANGYWNPMGIEEAVVSNSSNRRVGIKKFYVFYVGEAPHGNRTNWIMQEYRLSDSAASSSRSSTKRKSQPKTDHSKWVVCRVHESDENDDDGDGDGTELSCLDEVFLSLDDLDEVSLPN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05587 195 FunFam NAC domain-containing protein 104 18 164 - -
Arst3g05587 195 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Arst3g05587 195 PANTHER NAC TRANSCRIPTION FACTOR 56 9 165 - -
Arst3g05587 195 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Arst3g05587 195 MobiDBLite consensus disorder prediction 142 163 - -
Arst3g05587 195 MobiDBLite consensus disorder prediction 133 173 - -
Arst3g05587 195 Pfam No apical meristem (NAM) protein 10 128 IPR003441 GO:0003677|GO:0006355
Arst3g05587 195 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05587 Arst-Chr3 130004406 130005834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05587 1 160 NAC Transcription Factor Family AT1G69490 42.857 9.59e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst3g05587 NAM 2.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05587 - - gmx:100788893 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g05587 3 130004406 130005834 Arst3g05587 3 130004406 130005834 ECH
Arst3g05587 3 130004406 130005834 Arst10g00728 10 6055327 6056913 PCT