LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g05579	ATGAGAATGAGGTTCTTTTGGAGCTGCATGGAGCGAGTGACTTCATGGTGCTTCATGGGACAGTTTCTCATTTGTGCAATTCTGGTGCTTGACGTGATGCTGAAGGTTTCTGCTAATTCAGAAGGTGATGCCCTGAATTCTTTGAAGAACAGCTTGACAGATCCTGGTGATGTTCTTCAAAGCTGGGATTCCAGTCTTGTCAATCCATGTACATGGTTTCATGTTACTTGCAGCAATGATAATAGTGTGATCCGTGTTGATCTAGGAAATGCAAACCTTTCCGGTCAACTAGTTCCGGCACTTGGTCGGCTCCCAAATTTACAGTACTTGGAACTTTATAGCAATAATATCACTGGGAAAATTCCAGATGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTGTACGTGAATAAGTTAACCGGCCCTATACCGGACTCATTGAGCAACCTTAAAAAGCTACGTTTCCTGCGTCTCAACAACAATAGTTTGTCAGGAAAAATTCCCATGTCTTTGACAACTGTGATGTCACTGCAAGTCCTTGATCTATCAAACAACAATTTAACAGGAGATGTTCCAATAAATGGTTCATTTTCAATGTTCACTCCAATCAGTTTTAAAAATAATAGCCCTGGCTTGAATGAAACAAACCCTCCATCTCCCCCCACTGCTCCACCTCCAAAAGCTTCTTCAGGTAGCAGTGCCACTGGATCTATTGCTGGAGGAGTTGCTGCAGGTGCTGCTCTGTTGTTTGCAGGCCCTGCCATTGCAGTTGCCTGTTTGCGAAGAAGGAAACGGGCCGATTATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCATCTTGGTCAGCTTAAAAGGTTTTCGCTGCGTGAGCTGCAAGTCGCTACAGATAGCTTTAATAGCAAGAATATTCTTGGAAGAGGAGGGTTTGGCAAGGTTTATAAAGGACGCCTTACCAATGGTACTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACACAGGGTGGGGAGCTTCAATTTCAAACTGAAGTGGAAATGATTAGCATGGCTGTCCATCGTAATTTGCTCCGGCTGCATGGTTTTTGTATGACACCTACCGAACGGTTGCTTGTGTATCCTTTCATGGCAAATGGAAGTGTATCATCTTGTTTACGGGATCGTCCAGAAACACGTCCACCACTTGACTGGAAAAAAAGAAAGAGTATAGCACTGGGATCTGCTCGGGGACTTGCTTATTTACATGATCATTGTAATCCAAAGATTATTCATCGTGATGTCAAAGCTGCTAATATATTGCTGGATGAGGATTTTGAAGCAGTTGTTGGAGATTTTGGCTTAGCAAAGCTGATGGATTACAGAAATACTCATGTTACCACTGCTGTACGTGGTACAATCGGGCATATAGCGCCGGAGTACCTCTCAACCGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTGATAACCGGACAGAGGGCTTTTGATCTAGCACGTCTTGCCAATGATGATGATGTCATGTTGCTTCATTGGGTTAAAGGAATTCTGAAGGACAAGAAGCTGGAGACACTGGTTGATGCAGATTTACAGGGAAATTATGAAGATGAAGAGGTAGAGCAACTGATCCAGGTGGCCTTATTGTGCACACAAAGCTCCCCTATGGAAAGGCCTAAGATGTCTGAGGTGGTGAGCATGCTAGAAGGTGATGGTTTGGCAGAAAAATGGGATCAATGGCAGAAAGAGGAGATGCCAATGACCCAGCATGAATTCGACCGCATGCGCCATCACACTACTGATATGCTCTTAGACTCCACTTTCAATATCCCAGCAGATGAACTCTCTGGTCCTAGATGA	1884	0.4384	MRMRFFWSCMERVTSWCFMGQFLICAILVLDVMLKVSANSEGDALNSLKNSLTDPGDVLQSWDSSLVNPCTWFHVTCSNDNSVIRVDLGNANLSGQLVPALGRLPNLQYLELYSNNITGKIPDELGNLTNLVSLDLYVNKLTGPIPDSLSNLKKLRFLRLNNNSLSGKIPMSLTTVMSLQVLDLSNNNLTGDVPINGSFSMFTPISFKNNSPGLNETNPPSPPTAPPPKASSGSSATGSIAGGVAAGAALLFAGPAIAVACLRRRKRADYFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFNSKNILGRGGFGKVYKGRLTNGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMANGSVSSCLRDRPETRPPLDWKKRKSIALGSARGLAYLHDHCNPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLHWVKGILKDKKLETLVDADLQGNYEDEEVEQLIQVALLCTQSSPMERPKMSEVVSMLEGDGLAEKWDQWQKEEMPMTQHEFDRMRHHTTDMLLDSTFNIPADELSGPR	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst3g05579	627	ProSitePatterns	Protein kinases ATP-binding region signature.	308	330	IPR017441	GO:0005524
	Arst3g05579	627	SMART	serkin_6	302	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst3g05579	627	SUPERFAMILY	L domain-like	39	204	-	-
	Arst3g05579	627	FunFam	Somatic embryogenesis receptor kinase 1	37	224	-	-
	Arst3g05579	627	Pfam	Leucine rich repeat	105	165	IPR001611	GO:0005515
	Arst3g05579	627	FunFam	Somatic embryogenesis receptor-like kinase 1	379	596	-	-
	Arst3g05579	627	Pfam	Leucine Rich Repeat	178	192	IPR001611	GO:0005515
	Arst3g05579	627	Gene3D	Phosphorylase Kinase; domain 1	271	378	-	-
	Arst3g05579	627	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	25	586	-	-
	Arst3g05579	627	Pfam	Leucine rich repeat N-terminal domain	38	78	IPR013210	-
	Arst3g05579	627	MobiDBLite	consensus disorder prediction	210	237	-	-
	Arst3g05579	627	Gene3D	Transferase(Phosphotransferase) domain 1	379	596	-	-
	Arst3g05579	627	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	425	437	IPR008271	GO:0004672\|GO:0006468
	Arst3g05579	627	FunFam	Somatic embryogenesis receptor kinase 1	271	378	-	-
	Arst3g05579	627	SUPERFAMILY	Protein kinase-like (PK-like)	281	577	IPR011009	-
	Arst3g05579	627	Pfam	Protein kinase domain	303	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst3g05579	627	Gene3D	Ribonuclease Inhibitor	37	218	IPR032675	-
	Arst3g05579	627	ProSiteProfiles	Protein kinase domain profile.	302	581	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g05579	Arst-Chr3	129914634	129919269	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g05579	27	627	Receptor kinase-like Gene Family	AT4G33430	73.425	0.0	913

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Arst3g05579		Pkinase	1.2e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g05579	K13416		-	sind:105169199	922.924