Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05578 ATGAGAATGAGGTTCTTTTGGAGCTGCATGGAGCGAGTGACTTCATGGTGCTTCATGGGACAGTTTCTCATTTGTGCAATTCTGGTGCTTGACGTGATGCTGAAGGTTTCTGCTAATTCAGAAGGTGATGCCCTGAATTCTTTGAAGAACAGCTTGACAGATCCTGGTGATGTTCTTCAAAGCTGGGATTCCAGTCTTGTCAATCCATGTACATGGTTTCATGTTACTTGCAGCAATGATAATAGTGTGATCCGTGTTGATCTAGGAAATGCAAACCTTTCCGGTCAACTAGTTCCGGCACTTGGTCGGCTCCCAAATTTACAGTACTTGGAACTTTATAGCAATAATATCACTGGGAAAATTCCAGATGAGCTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTGTACGTGAATAAGTTAACCGGCCCTATACCGGACTCATTGAGCAACCTTAAAAAGCTACGTTTCCTTGATCTATCAAACAACAATTTAACAGGAGATGTTCCAATAAATGGTTCATTTTCAATGTTCACTCCAATCAGTTTTAAAAATAATAGCCCTGGCTTGAATGAAACAAACCCTCCATCTCCCCCCACTGCTCCACCTCCAAAAGCTTCTTCAGGTAGCAGTGCCACTGGATCTATTGCTGGAGGAGTTGCTGCAGGTGCTGCTCTGTTGTTTGCAGGCCCTGCCATTGCAGTTGCCTGTTTGCGAAGAAGGAAACGGGCCGATTATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCATCTTGGTCAGCTTAAAAGGTTTTCGCTGCGTGAGCTGCAAGTCGCTACAGATAGCTTTAATAGCAAGAATATTCTTGGAAGAGGAGGGTTTGGCAAGGTTTATAAAGGACGCCTTACCAATGGTACTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACACAGGGTGGGGAGCTTCAATTTCAAACTGAAGTGGAAATGATTAGCATGGCTGTCCATCGTAATTTGCTCCGGCTGCATGGTTTTTGTATGACACCTACCGAACGGTTGCTTGTGTATCCTTTCATGGCAAATGGAAGTGTATCATCTTGTTTACGGGATCGTCCAGAAACACGTCCACCACTTGACTGGAAAAAAAGAAAGAGTATAGCACTGGGATCTGCTCGGGGACTTGCTTATTTACATGATCATTGTAATCCAAAGATTATTCATCGTGATGTCAAAGCTGCTAATATATTGCTGGATGAGGATTTTGAAGCAGTTGTTGGAGATTTTGGCTTAGCAAAGCTGATGGATTACAGAAATACTCATGTTACCACTGCTGTACGTGGTACAATCGGGCATATAGCGCCGGAGTACCTCTCAACCGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTGATAACCGGACAGAGGGCTTTTGATCTAGCACGTCTTGCCAATGATGATGATGTCATGTTGCTTCATTGGGTTAAAGGAATTCTGAAGGACAAGAAGCTGGAGACACTGGTTGATGCAGATTTACAGGGAAATTATGAAGATGAAGAGGTAGAGCAACTGATCCAGGTGGCCTTATTGTGCACACAAAGCTCCCCTATGGAAAGGCCTAAGATGTCTGAGGTGGTGAGCATGCTAGAAGGTGATGGTTTGGCAGAAAAATGGGATCAATGGCAGAAAGAGGAGATGCCAATGACCCAGCATGAATTCGACCGCATGCGCCATCACACTACTGATATGCTCTTAGACTCCACTTTCAATATCCCAGCAGATGAACTCTCTGGTCCTAGATGA 1812 0.4393 MRMRFFWSCMERVTSWCFMGQFLICAILVLDVMLKVSANSEGDALNSLKNSLTDPGDVLQSWDSSLVNPCTWFHVTCSNDNSVIRVDLGNANLSGQLVPALGRLPNLQYLELYSNNITGKIPDELGNLTNLVSLDLYVNKLTGPIPDSLSNLKKLRFLDLSNNNLTGDVPINGSFSMFTPISFKNNSPGLNETNPPSPPTAPPPKASSGSSATGSIAGGVAAGAALLFAGPAIAVACLRRRKRADYFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFNSKNILGRGGFGKVYKGRLTNGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMANGSVSSCLRDRPETRPPLDWKKRKSIALGSARGLAYLHDHCNPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLHWVKGILKDKKLETLVDADLQGNYEDEEVEQLIQVALLCTQSSPMERPKMSEVVSMLEGDGLAEKWDQWQKEEMPMTQHEFDRMRHHTTDMLLDSTFNIPADELSGPR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05578 603 SUPERFAMILY L domain-like 39 172 - -
Arst3g05578 603 FunFam Somatic embryogenesis receptor kinase 1 247 354 - -
Arst3g05578 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Arst3g05578 603 MobiDBLite consensus disorder prediction 186 213 - -
Arst3g05578 603 SUPERFAMILY Protein kinase-like (PK-like) 257 553 IPR011009 -
Arst3g05578 603 FunFam Somatic embryogenesis receptor-like kinase 1 355 572 - -
Arst3g05578 603 FunFam Somatic embryogenesis receptor kinase 1 37 170 - -
Arst3g05578 603 Pfam Leucine rich repeat N-terminal domain 38 78 IPR013210 -
Arst3g05578 603 Pfam Protein kinase domain 279 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst3g05578 603 Pfam Leucine rich repeat 105 165 IPR001611 GO:0005515
Arst3g05578 603 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524
Arst3g05578 603 SMART serkin_6 278 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst3g05578 603 Gene3D Transferase(Phosphotransferase) domain 1 355 572 - -
Arst3g05578 603 Gene3D Phosphorylase Kinase; domain 1 247 354 - -
Arst3g05578 603 ProSiteProfiles Protein kinase domain profile. 278 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst3g05578 603 Gene3D Ribonuclease Inhibitor 37 192 IPR032675 -
Arst3g05578 603 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 25 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05578 Arst-Chr3 129914634 129919273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05578 22 603 Receptor kinase-like Gene Family AT1G71830 71.910 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Arst3g05578 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05578 K13416 - gmx:100804180 881.708