Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05546 TTTTTCTGCGTTTTTCGTGTTTCGATTTTCGTTAAAGGCACAACCGCCGACGACCTCTTCCCTCTCTTTGACAAGTATGGCAAGGTCGTCGACATCTTCATCCCCAAAGATCGAAGGACTGGCGAGTCCAGGGGTTTTGCCTTTGTGCGTTACAAGTATGCCGATGAGGCTCAGAAGGCCGTCGAAAGGCTTGACGGAAGAATGGTTGATGGTCGGGAAATAACTGTCCAATTTGCAAAATATGGCCCCAATGCAGAGCGCATTCACAAAGGAAGGATTATTGAATCAATGCCAAGAACAAGGCATAGGTCAAGGAGCCGCAGCCCAAGGAGAAGGTACCGTGATGATTACAGAGACAGGGATTACCGTAGGAGAAGTCGTAGCAGAAGTTATGATAGGTATGAACGTGACCGGTACCGTGGGAGGGACAGAGATTATCGTCGTCGAAGCAGAAGCCGCAGTGCCAGCCCTGATTACAAGAGTCGAGGGAGGGGGCGCTATGATGATGATGATGATCGTCGTAGTAGAAGCCGGAGCCGATCGGTGGATAGCCGCTCCCCTGTACATAGTCCTAGTCCTCGAAGGAGTCCTTCACCCCGCAGGAGTATGTCTCCTGAAAGGAGTGCATCCCCGAGAAGTCCTAGAGGTGAAAGTCCTGATCATCGTAGCCGTGATGGACGATCTCCCTCACCTCGCAGTGTCTCACCGCGTGGTCGCCCTGATGCTTCGCGAAGCCCATCTCCTCGGAATTCAAATGGTGATGAGTAA 768 0.5182 FFCVFRVSIFVKGTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIESMPRTRHRSRSRSPRRRYRDDYRDRDYRRRSRSRSYDRYERDRYRGRDRDYRRRSRSRSASPDYKSRGRGRYDDDDDRRSRSRSRSVDSRSPVHSPSPRRSPSPRRSMSPERSASPRSPRGESPDHRSRDGRSPSPRSVSPRGRPDASRSPSPRNSNGDE 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05546 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 75 IPR000504 GO:0003723
Arst3g05546 255 CDD RRM_SRSF2_SRSF8 14 77 - -
Arst3g05546 255 SMART rrm1_1 8 77 IPR000504 GO:0003723
Arst3g05546 255 MobiDBLite consensus disorder prediction 213 228 - -
Arst3g05546 255 MobiDBLite consensus disorder prediction 184 211 - -
Arst3g05546 255 MobiDBLite consensus disorder prediction 110 183 - -
Arst3g05546 255 Gene3D - 6 91 IPR012677 -
Arst3g05546 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 81 IPR000504 GO:0003723
Arst3g05546 255 MobiDBLite consensus disorder prediction 89 255 - -
Arst3g05546 255 SUPERFAMILY RNA-binding domain, RBD 9 89 IPR035979 GO:0003676
Arst3g05546 255 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 10 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05546 Arst-Chr3 129770388 129773740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05546 5 79 Eukaryotic Initiation Factors Gene Family AT3G11400 34.667 5.71e-09 53.9