Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05490 ATGGCTGACGTCAAGTGCTATGTTCCCCCTAATCAATTTAGTGGTTCACTTTTCCTGTTTGATCGGAAGGTGCTGAGATACTTTAGAAAAGATGGCCACAACTGGAGAAAGAAAAAGGATGGAAAAACAGTGAGGGAAGCTCATGAGAGACTTAAGGCTGGAAGTGTGGATGTGTTGCACTGCTATTATGCACACGGAGAAGAAAATGAAAATTTTCAAAGACGCACATACTGGATGCTTGATGAGGAACTCTCGCACATTGTTCTTGTCCATTATAGGGAAGTGAAGGCAACTAAGGCAAATTTTAGAGGTGCTGCCAAAGAAAATCAAGAATCTCTTCCTTATGCACAAATTGACAAACTACCAGGTTCCACGGAGAAGGAAATGTCTTTATCATGTAGTCTTCATCCACATAACTACCAGGTTCCATCACATACAATAGATACAACAAGCATGAAGAGCACTCAAGCAACAGAATATGAAGAAGCTGAGTCAGCATTGAATAGTTACGCAAGTTCAGAAGACTACTCCTTCCTTGAAACACAACACCCAGCTGTTGAGAAGATTCCTGATACTTATTGCCTGCTGCAGTTCATAAATGAACAAGAGAAGTTGTGTGGCACTCCTGGGATGAATCATATCATGCTCAGTCAAGCTGGCAAAATCAAAGACATTCATAATGTTAGATTGGCATATGAACCCCCACAGCACCTTGGCTTTTCAATGTGGGAAAATATCTTGGAAAATAATGGGAGAAGTCAATACATGCCTCTTCAACCCATACTCCCTGAAATCCAACCTGATAACATGGGAATCAATAGCAATGCCTCTCTATTGAGGTCAAATTCCACCACCAATATTACCAAAGTGAATGGGACAGAAAATATGGTACAAGTTGAAGGAAATTGGCAGGTAATGAATGAGTTATATGAATTTGATCCTCAAAGATCCTTGGAACAGTGTCTTATACATCAAGATAAACCAAAGGTTCTTATGATAGATGACCCTCAAGAAAAACTATTAGATGCAAAAGAGAAGATAGAAACCAATAGAAGCCTGGATGGAATAGATGATACAAATTTAACTCTAAAGAAGGCTCTGTTAGATGGATCCCTTGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTTGGAGATGTGGAAGAATCTAAAACTCCATCCACTTTTAGTGCTTATTGGGGTACAGTTGAAAGTGAAAACGATGTGGACAATGCAACTATTCCTTCCGAAGTGCACCTGGATACCTATGCACTGGATCCATCTATTTCCCATGATCAACTTTTTACCATTATTGACTTTTCCCCAAGCTGGGCATTTGAAGGCTCAGAAATTAAGATTCTCATTTATGGACAATTCTTGAGGAGTCTACAGGAAGCAGAACAATGTAAATGGTCTTGCATGTTCGGTGAGGTAGAAGTGCCAGCTAATATCATTGACAATGGTGTTCTTTCTTGTTATACTCCTCCACACAAAACTGGGAGGATTCCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAAATACGAGAATTTGATTTCCGAGACATTTACACTCAAGAAGTCAACAATGCAGCTGAGCAGAGAGAGAGCATTTCTGATAATTTCAGTGTGCGATTTGAAGAGCTGCTGTACATGGGGCATACCTTACCTCAAAACTTAGATCCAATCTGTGTAAGTGAGAAATCTGAACTGAGAAGTAAAATAAGTGCTTTGCTGAGGAAGGAGGAGGATGATTGGGATAAGTTGCTGAAACTCACTCTAGAGAAAGATTTTTCTCCACAAAATGTACAGGAGCAGCTGCTTCAAAATCTTTTGAAAGATAAGTTACTTCGGTGGCTCCTTCAAAAAGTCATTGAAGATGGGAAAGGCCCTAATGTATTGGATGAGGGTGGCCAAGGAGTACTTCATCTTGCGGCTGCTCTTGGCTATGATTGGGCCTTACAACCCACAGTAATTGCTGGTGTAAATGTGAACTTCCGCGATGTAAATGGATGGACTGCTCTTCATTGGGCTGCATTCTGTGGCAGGGAGCTCACAGTTGCTTCCCTCATCTCTCTTGGCGCAGCACCTGGGGCGCTGACTGATCCAAGCCCAGAGCATCCTTCTGGTAGAACACCAGCTGACCTGGCTTCTGCAAACGGTCACAAAGGAATTGCAGGGTATCTTGCAGAATCTTCAATAAGCGTGCAACTATTATCTCTTGATATGAACAGGGACACGAGAGAAAGTTCTGGATCAAAAGTAGTATACAGGGTCCAACACAATACTACTGAAGTTAATGATGATCACCTATCATATGAACTGTCACTGAAAGATTCACTGGCAGCAGTGTGTAATGCCAGCCAGGCTGCTGCACGTATTCATGAAGTTTATAGAGTGCAATCTTTCCAAAGAAAACAACTGAAAGAATATGATGATAAATTTGGAATATCTGATGAAGATGCTCTTTCTCTTATAACTGTAAAACCACACAAGGTTGGACAACGCAATGAGCCTGTACATGCAGCTGCAATACGAATCCAGAACAAATTCCGCAGTTGGAAGGGCAGAAAAGAATTTTTGATGATTCGCCAAAGAATAGTTAAAATTCAGGCTCATGTAAGGGGGCACCAGGTTAGGAAGAACTGTGGAAAGATAATTTGGTCAGTTGGAATTTTAGAAAAAGTTATTTTGCGCTGGCGCCGAAAAGGTAGTGGTTTACGTGGATTTAAATTGGAAGATGTTCCCGAGGGAACTATGGTACAAGATACACAGTGCAAGGAGGATGAGTATGATTTCTTGAAAGAAGGCAGAAAGCAAACAGAGGAAAGGTTGCAGAAAGCCCTATCCAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTGTTGAATGTTGTAACTGAGATCCAAGAAAACCAGCTAAAACATCATAGGAGTTCAGAAGAGAGAAGAGAATTTGATAACCTCATTGATCTTGAAACTTTGCTGGACGAGGATACTTTCATGCTTACAGTCATTTAG 3066 0.4106 MADVKCYVPPNQFSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWMLDEELSHIVLVHYREVKATKANFRGAAKENQESLPYAQIDKLPGSTEKEMSLSCSLHPHNYQVPSHTIDTTSMKSTQATEYEEAESALNSYASSEDYSFLETQHPAVEKIPDTYCLLQFINEQEKLCGTPGMNHIMLSQAGKIKDIHNVRLAYEPPQHLGFSMWENILENNGRSQYMPLQPILPEIQPDNMGINSNASLLRSNSTTNITKVNGTENMVQVEGNWQVMNELYEFDPQRSLEQCLIHQDKPKVLMIDDPQEKLLDAKEKIETNRSLDGIDDTNLTLKKALLDGSLAEEGLKKLDSFNQWMSKELGDVEESKTPSTFSAYWGTVESENDVDNATIPSEVHLDTYALDPSISHDQLFTIIDFSPSWAFEGSEIKILIYGQFLRSLQEAEQCKWSCMFGEVEVPANIIDNGVLSCYTPPHKTGRIPFYVTCSNRLACSEIREFDFRDIYTQEVNNAAEQRESISDNFSVRFEELLYMGHTLPQNLDPICVSEKSELRSKISALLRKEEDDWDKLLKLTLEKDFSPQNVQEQLLQNLLKDKLLRWLLQKVIEDGKGPNVLDEGGQGVLHLAAALGYDWALQPTVIAGVNVNFRDVNGWTALHWAAFCGRELTVASLISLGAAPGALTDPSPEHPSGRTPADLASANGHKGIAGYLAESSISVQLLSLDMNRDTRESSGSKVVYRVQHNTTEVNDDHLSYELSLKDSLAAVCNASQAAARIHEVYRVQSFQRKQLKEYDDKFGISDEDALSLITVKPHKVGQRNEPVHAAAIRIQNKFRSWKGRKEFLMIRQRIVKIQAHVRGHQVRKNCGKIIWSVGILEKVILRWRRKGSGLRGFKLEDVPEGTMVQDTQCKEDEYDFLKEGRKQTEERLQKALSRVKSMVQYPEARDQYHRLLNVVTEIQENQLKHHRSSEERREFDNLIDLETLLDEDTFMLTVI 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05490 1021 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 987 - -
Arst3g05490 1021 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 987 - -
Arst3g05490 1021 SUPERFAMILY Ankyrin repeat 630 742 IPR036770 -
Arst3g05490 1021 Gene3D - 847 895 - -
Arst3g05490 1021 SUPERFAMILY E set domains 443 529 IPR014756 -
Arst3g05490 1021 FunFam Calmodulin-binding transcription activator 2 437 533 - -
Arst3g05490 1021 ProSiteProfiles IQ motif profile. 872 896 IPR000048 GO:0005515
Arst3g05490 1021 ProSiteProfiles Ankyrin repeat profile. 679 711 IPR002110 GO:0005515
Arst3g05490 1021 ProSiteProfiles IQ motif profile. 850 878 IPR000048 GO:0005515
Arst3g05490 1021 Pfam CG-1 domain 9 94 IPR005559 GO:0003677
Arst3g05490 1021 Pfam IQ calmodulin-binding motif 874 891 IPR000048 GO:0005515
Arst3g05490 1021 Pfam IQ calmodulin-binding motif 850 869 IPR000048 GO:0005515
Arst3g05490 1021 Pfam Ankyrin repeats (3 copies) 651 745 IPR002110 GO:0005515
Arst3g05490 1021 FunFam Calmodulin-binding transcription activator 2 848 896 - -
Arst3g05490 1021 Gene3D - 605 751 IPR036770 -
Arst3g05490 1021 SMART iq_5 871 893 IPR000048 GO:0005515
Arst3g05490 1021 SMART iq_5 848 870 IPR000048 GO:0005515
Arst3g05490 1021 Coils Coil 940 960 - -
Arst3g05490 1021 Pfam IPT/TIG domain 443 519 IPR002909 -
Arst3g05490 1021 ProSiteProfiles CG-1 DNA-binding domain profile. 1 101 IPR005559 GO:0003677
Arst3g05490 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 898 IPR027417 -
Arst3g05490 1021 SMART ANK_2a 718 747 IPR002110 GO:0005515
Arst3g05490 1021 SMART ANK_2a 679 708 IPR002110 GO:0005515
Arst3g05490 1021 SMART CG_1_2 1 96 IPR005559 GO:0003677
Arst3g05490 1021 Gene3D Immunoglobulins 437 532 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05490 Arst-Chr3 129409933 129416621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05490 19 1018 CAMTA Transcription Factor Family AT2G22300 48.693 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Arst3g05490 Ank_2 8.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05490 K21596 - gmx:100798875 1420.6