Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05472 ATGCTTCAACTTCACTACTGGAGGAGGCAGCTTGTTGTTCTTTGGGAAGGAGATTCTGTTGATTATGCATGCACGCCAGAGGAAGTTCAGCAACACTTTCAATCATGTGGTACAGTGAACAGGGTCACCATCCTGACTGACAAGTTCGGCCACCCTAAAGGTTTTGCTTATGTGGAGTTCGTGGAAGTTGAAGCTGTTCAAGAGGCTCTTGTCTTGAATGAATCGGAGTTACATGGGCGTCAATTGAAGGTCTTGCCTAAGAGGACCAATGTTCCCGGAATGAAACAGTATCGTCCTAGGCGCTATAATCCCTACATGGCATATGGCTTTAGGAGACCATATCCTCCTCCTTACTTTTATTCTCCTTATGGATACGGGAAGGTTCCTAGGTTTAGAAGGTCAACTCGTTACATGCCATACTACTAG 426 0.4554 MLQLHYWRRQLVVLWEGDSVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMAYGFRRPYPPPYFYSPYGYGKVPRFRRSTRYMPYY 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05472 141 SMART rrm1_1 20 85 IPR000504 GO:0003723
Arst3g05472 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 83 IPR000504 GO:0003723
Arst3g05472 141 SUPERFAMILY RNA-binding domain, RBD 20 111 IPR035979 GO:0003676
Arst3g05472 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 89 IPR000504 GO:0003723
Arst3g05472 141 Gene3D - 18 93 IPR012677 -
Arst3g05472 141 CDD RRM_II_PABPs 20 85 - -
Arst3g05472 141 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 20 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05472 Arst-Chr3 129343447 129347150 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05472 19 84 Eukaryotic Initiation Factors Gene Family AT2G36660 34.328 3.45e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05472 K14396 - gmx:100789721 223.016