Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05460 ATGAAGAGACTTAGCAGCTCCGATGATTCTTTGGGCGCTCTCATGACAATTTGTCCATCATCAACAACAGAACACAGTCCAAGGAACAAACAGCAGGTGTACGGAAGGGAGTTCCAATCGATGTTGGATGGACTGGACGAAGACGGTTGCATCGAAGAATCGGGGCACCACGGCGAGAAGAAACGGCGCTTAAGCGTGGAACAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAGAACAAGCTGGAACCGGACAGAAAGGTGAAGCTGGCACAAGAACTGGGCTTGCAGCCAAGACAAGTTGCCGTTTGGTTCCAAAACCGCAGAGCCAGGTGGAAAACCAAGCAGTTAGAAAGAGACTACGGCGTTCTCAAAGCCAATTACGAAGCTCTTAAACTCAACTTCGAAAAACTCCAACAAGACAACCAAGCCTTGCATAAAGAGATTAAGGGATTGAAATCAAGGATGCAAGACGAACGCACCGAAAGCGATGCTTCGGTGAAGAAGGAACAAGTGGAGATGATAACAACGCTGCAAGACTCGGAGGAGAACCCTTGCGATCTTGAAACCGCTGCCGCCATTGCTGGATCGGACTCCAACAAGGACCTGAGCTACGATTGCTTCAACAAGGGCGACGGTGAGGGCGGTGATGGTGTGGGAGTAGCAGCATCGATATCGCTGTTCCCTTGTGGGGACTTGAAAGACGGTTCTTCGGATAGCGATTCAAGCGCGATCTTGAACGAAGAGAATAACAACAGCAGCTGTAGCCCCATGAACAACGCGGCCATGTCTTCGTGTGGTGGTGGGGTTCTGCAAAGTTCGAACCTTTTGATGTCTCAGCATGACGAGTCGCCATCATCGATGAGCTGCTTTCAGTTCCAGAAGGCGTACCAGGCCACACAGTACGTGAAGATGGAGGAGCACAACTTCTTCAGTGCAGATGAGACGTGCAATTTCTTCTCCGATGAACAAGCACCAACCCTTCAGTGGTACTGTTCGGAAGAGTGGAGTTGA 1014 0.502 MKRLSSSDDSLGALMTICPSSTTEHSPRNKQQVYGREFQSMLDGLDEDGCIEESGHHGEKKRRLSVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNFEKLQQDNQALHKEIKGLKSRMQDERTESDASVKKEQVEMITTLQDSEENPCDLETAAAIAGSDSNKDLSYDCFNKGDGEGGDGVGVAASISLFPCGDLKDGSSDSDSSAILNEENNNSSCSPMNNAAMSSCGGGVLQSSNLLMSQHDESPSSMSCFQFQKAYQATQYVKMEEHNFFSADETCNFFSDEQAPTLQWYCSEEWS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05460 337 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Arst3g05460 337 CDD homeodomain 60 116 IPR001356 GO:0003677
Arst3g05460 337 Pfam Homeobox associated leucine zipper 115 157 IPR003106 GO:0006355|GO:0043565
Arst3g05460 337 SUPERFAMILY Homeodomain-like 42 117 IPR009057 -
Arst3g05460 337 Coils Coil 114 162 - -
Arst3g05460 337 Gene3D - 54 122 - -
Arst3g05460 337 Pfam Homeodomain 60 113 IPR001356 GO:0003677
Arst3g05460 337 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Arst3g05460 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 331 IPR045224 GO:0003700
Arst3g05460 337 SMART HOX_1 58 119 IPR001356 GO:0003677
Arst3g05460 337 FunFam Homeobox-leucine zipper protein HAT5 53 117 - -
Arst3g05460 337 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Arst3g05460 337 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05460 Arst-Chr3 129214527 129216745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05460 1 333 Homeobox Transcription Factor Family AT2G22430 45.455 5.35e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst3g05460 Homeodomain 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05460 K09338 - gmx:100796213 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g05460 3 129214527 129216745 Arst3g05460 3 129214527 129216745 ECH
Arst3g05460 3 129214527 129216745 Arst10g01079 10 11413035 11416300 PCT