Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05459 ATGAAGAGACTTAGCAGCTCCGATGATTCTTTGGGCGCTCTCATGACAATTTGTCCATCATCAACAACAGAAGAACACAGTCCAAGGAACAAACAGCAGGTGTACGGAAGGGAGTTCCAATCGATGTTGGATGGACTGGACGAAGACGGTTGCATCGAAGAATCGGGGCACCACGGCGAGAAGAAACGGCGCTTAAGCGTGGAACAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAGAACAAGCTGGAACCGGACAGAAAGGTGAAGCTGGCACAAGAACTGGGCTTGCAGCCAAGACAAGTTGCCGTTTGGTTCCAAAACCGCAGAGCCAGGTGGAAAACCAAGCAGTTAGAAAGAGACTACGGCGTTCTCAAAGCCAATTACGAAGCTCTTAAACTCAACTTCGAAAAACTCCAACAAGACAACCAAGCCTTGCATAAAGAGATTAAGGGATTGAAATCAAGGATGCAAGACGAACGCACCGAAAGCGATGCTTCGGTGAAGAAGGAACAAGTGGAGATGATAACAACGCTGCAAGACTCGGAGGAGAACCCTTGCGATCTTGAAACCGCTGCCGCCATTGCTGGATCGGACTCCAACAAGGACCTGAGCTACGATTGCTTCAACAAGGGCGACGGTGAGGGCGGTGATGGTGTGGGAGTAGCAGCATCGATATCGCTGTTCCCTTGTGGGGACTTGAAAGACGGTTCTTCGGATAGCGATTCAAGCGCGATCTTGAACGAAGAGAATAACAACAGCAGCTGTAGCCCCATGAACAACGCGGCCATGTCTTCGTGTGGTGGTGGGGTTCTGCAAAGTTCGAACCTTTTGATGTCTCAGCATGACGAGTCGCCATCATCGATGAGCTGCTTTCAGTTCCAGAAGGCGTACCAGGCCACACAGTACGTGAAGATGGAGGAGCACAACTTCTTCAGTGCAGATGAGACGTGCAATTTCTTCTCCGATGAACAAGCACCAACCCTTCAGTGGTACTGTTCGGAAGAGTGGAGTTGA 1017 0.5015 MKRLSSSDDSLGALMTICPSSTTEEHSPRNKQQVYGREFQSMLDGLDEDGCIEESGHHGEKKRRLSVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNFEKLQQDNQALHKEIKGLKSRMQDERTESDASVKKEQVEMITTLQDSEENPCDLETAAAIAGSDSNKDLSYDCFNKGDGEGGDGVGVAASISLFPCGDLKDGSSDSDSSAILNEENNNSSCSPMNNAAMSSCGGGVLQSSNLLMSQHDESPSSMSCFQFQKAYQATQYVKMEEHNFFSADETCNFFSDEQAPTLQWYCSEEWS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05459 338 SUPERFAMILY Homeodomain-like 44 118 IPR009057 -
Arst3g05459 338 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Arst3g05459 338 SMART HOX_1 59 120 IPR001356 GO:0003677
Arst3g05459 338 Gene3D - 55 123 - -
Arst3g05459 338 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Arst3g05459 338 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Arst3g05459 338 FunFam Homeobox-leucine zipper protein HAT5 54 118 - -
Arst3g05459 338 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Arst3g05459 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 332 IPR045224 GO:0003700
Arst3g05459 338 MobiDBLite consensus disorder prediction 1 33 - -
Arst3g05459 338 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Arst3g05459 338 CDD homeodomain 61 117 IPR001356 GO:0003677
Arst3g05459 338 Pfam Homeobox associated leucine zipper 116 158 IPR003106 GO:0006355|GO:0043565
Arst3g05459 338 MobiDBLite consensus disorder prediction 9 33 - -
Arst3g05459 338 Coils Coil 115 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05459 Arst-Chr3 129214527 129216745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05459 1 334 Homeobox Transcription Factor Family AT2G22430 45.455 6.16e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst3g05459 Homeodomain 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05459 K09338 - gmx:100796213 429.869