LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst3g05437	ACGCCGCCGTCGGGAAACAAGCCGAGATCCCTGCTGCCGCCGCTTCAGCCTCTGGCCATCAGAAGGCGCGGCGCGGAGGAGTGGCCGAGCGCCGGATCTGACGATCTCGGCGTGTGGCCACTCCCGGAGACTCCAAGAGGGTCCGTGTCTGTGGTGGGGTCATCATCGGAGTTCCAGTTGAAGAGGGAGAAGCTGGCCTTCTACGACAAAGAGTGTTCTCGGATTGCGGAGCACGTGTACCTCGGGAGTGACACGGTGGCCAAGAACCATGACCTGCTCCGGCAGAACGGCATCACTCACGTGCTCAACTGTGTTGGCTTCGTTTGCCCTGAATATTTCAAGCGCGATTTTGTTTACAAGACTCTCTGGTTGCAGGACAGTCCCACAGAAGACATCACCAGCATCCTGTACGATGTTTTCGATTACTTTGAGGAGGTTAGGGAGCAAGGTGGGCGCGTGTTGGTTCACTGCTGCCAAGGGGTTTCGAGATCGACCTCTCTGGTGATCGCGTATCTGATGTGGAGGGAAGGGCAGAGCTTCGAGGACGCGTTTCAGTACGTGAAGAATGCGAGGGGTGTCACCAATCCTAACATGGGTTTTGCGTGTCAGTTATTGCAGTGTCAGAAACGGGTACATGCTACTCCCGCTAGTCCTAATTCCATTCTTCGGATGTATAGAATGGCTCCTCATTCACCTTATGATCCTCTTCATTTGGTTCCTAAGATTGTCAACCACCCCTCTGCACAGGCCCTTGATTCTCGTGGTGCTTTCATTGTGCATGTTCCTTCTGCTATTTATGTTTGGACAGGCAACAACTGCAATTCGGTTATGTCTTCTAATGCAAGAGGCGCGGCATCTCAGGTTGTTCGCTATGAGAGGGCTACGGCTCCTGTTCTTACCATCCATGAGTATGACGAGCCACCGGAGTTTTGGATTGCTCTTGCCTCTGCTGATTGTGACCAGCAGGAGAAGGAGGACACAACCTTGGAAGCTGTTCGTCCTAGGAAGCTTGATGAATATGATTTGGATTATGAGATTTTCCAAAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTCTCTGTGTCTAATGCAGGCTCAGAGACCTGCCTTCCGGCCAGAGAAAGCGGTTGGGGGAGACTGCGCCGGAAACTCGCCAGCGGTTTCATCAAAGGATTGTTCACTTCATCCAAAAGGAACTCTACTAATGAAGAAGCTGCTCTTGTCATGGAAGACTTTGCTGTTAATGTTGATCCCAATGATTGCTCAGGCAGGGAAAAAGGTTATGTTGAAGTGTTGGATCATTTCGTTCCTATTACGGATGTGGATTCATCATTGCCAACATCATCAGATTATCTTCCTTGTTTCACGAGCAGCAGTTCCAAGTCACCAACGCTCTCGCCCTCCAGTTCTGATTATGCAAGTTCATTTACATTTTCACCTTCCTCAACAAATTTGTCTTCTCAGCAGCCATCACCTTCTACTTCTAGCATGGATTCAACCGAAACTATTTATGCCAAAGATGCTTCTGTATTGGACAGTTCCTCTCTGTTTCACAAGAAGGGTGATGTGTTTTTGGCTGATCAAACATCCGGAGGGTCCACCTTCTTTTTGCCATTGAAAGGGTCTATACCCTCCATTGCAGAGCGCAGAGGTAGTAATCCACCACCTCGCATGTTGCTACCTTCTTCAGTCACCGAGTCATCCCATCCTCACAGGAGCAAGATTCATGTAAGATCGAAGTCATTCTCTTTGCCGGAATTGGATGATAACTTGTTAAAGGATGTTGATTGCAAGCAAGCTGATCCTGCTTCATGTAAATAA	1821	0.4948	TPPSGNKPRSLLPPLQPLAIRRRGAEEWPSAGSDDLGVWPLPETPRGSVSVVGSSSEFQLKREKLAFYDKECSRIAEHVYLGSDTVAKNHDLLRQNGITHVLNCVGFVCPEYFKRDFVYKTLWLQDSPTEDITSILYDVFDYFEEVREQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHATPASPNSILRMYRMAPHSPYDPLHLVPKIVNHPSAQALDSRGAFIVHVPSAIYVWTGNNCNSVMSSNARGAASQVVRYERATAPVLTIHEYDEPPEFWIALASADCDQQEKEDTTLEAVRPRKLDEYDLDYEIFQKALAGGVVPPFSVSNAGSETCLPARESGWGRLRRKLASGFIKGLFTSSKRNSTNEEAALVMEDFAVNVDPNDCSGREKGYVEVLDHFVPITDVDSSLPTSSDYLPCFTSSSSKSPTLSPSSSDYASSFTFSPSSTNLSSQQPSPSTSSMDSTETIYAKDASVLDSSSLFHKKGDVFLADQTSGGSTFFLPLKGSIPSIAERRGSNPPPRMLLPSSVTESSHPHRSKIHVRSKSFSLPELDDNLLKDVDCKQADPASCK	606

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Arst3g05437	606	SMART	dsp_5	71	210	IPR020422	GO:0006470\|GO:0008138
Arst3g05437	606	ProSitePatterns	Tyrosine specific protein phosphatases active site.	155	165	IPR016130	GO:0016311\|GO:0016791
Arst3g05437	606	MobiDBLite	consensus disorder prediction	545	580	-	-
Arst3g05437	606	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	130	191	IPR000387	GO:0016311\|GO:0016791
Arst3g05437	606	CDD	DSP	72	206	-	-
Arst3g05437	606	Gene3D	Severin	223	321	IPR029006	-
Arst3g05437	606	MobiDBLite	consensus disorder prediction	480	500	-	-
Arst3g05437	606	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	64	212	IPR029021	-
Arst3g05437	606	SUPERFAMILY	Actin depolymerizing proteins	217	315	-	-
Arst3g05437	606	Pfam	Dual specificity phosphatase, catalytic domain	79	209	IPR000340	GO:0008138\|GO:0016311

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst3g05437	Arst-Chr3	129090832	129092905	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst3g05437	1	107	Protein tyrosine phosphatase (PTP) family	AT3G55270	51.639	7.08e-31	126

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst3g05437	-		-	lja:Lj6g3v0574850.1	709.523

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst3g05437	3	129090832	129092905	Arst3g05437	3	129090832	129092905	ECH
	Arst3g05437	3	129090832	129092905	Arst10g01045	10	10529566	10532390	PCT

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