Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05399 ATGCAGAGCCAACTTGTGTGTAATGGGTGTAGGAGCATTTTGCTTTATCCTAGAGGGGCAACCAATGTGTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGAATGGAGATGTCTCAACTTGTTTGCGGGGGATGTAGGACACTGCTAATGTACACACGTGGAGCTACAAGCGTGAGATGTTCCTGCTGTCAAACTGTAAACCTTGCACCACCAGCACCCAGTCAAGTCGCCCACGTGCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTACGGAGCTCCTTCTGTCAAATGTGCACTTTGCCAATATGTTACCAATGTCAATATGAACAATGGAAGGCTTCCAATCCCAGTCCATAGACCTAATGGAACAACCAACTATGGGACAGTACCCTCTACTTCAACATCGATGCCCCAATCTCAGACCCAGACCGTTGTGATAGAGAATCCCATGACTGTTGATTCAAATGGAAAATTGGTTAGCAATGTTGTTGTTGGGGTTACAACAGATAAAAAATAA 534 0.4569 MQSQLVCNGCRSILLYPRGATNVCCALCNTITSVPPPGMEMSQLVCGGCRTLLMYTRGATSVRCSCCQTVNLAPPAPSQVAHVHCGNCRTTLMYPYGAPSVKCALCQYVTNVNMNNGRLPIPVHRPNGTTNYGTVPSTSTSMPQSQTQTVVIENPMTVDSNGKLVSNVVVGVTTDKK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05399 177 Pfam LSD1 zinc finger 85 109 IPR005735 -
Arst3g05399 177 Pfam LSD1 zinc finger 46 70 IPR005735 -
Arst3g05399 177 Pfam LSD1 zinc finger 7 31 IPR005735 -
Arst3g05399 177 NCBIfam zinc finger domain, LSD1 subclass 82 112 IPR005735 -
Arst3g05399 177 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Arst3g05399 177 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Arst3g05399 177 PANTHER PROTEIN LSD1 2 176 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05399 Arst-Chr3 128870593 128873726 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Arst3g05399 zf-LSD1 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05399 - - gmx:100776394 338.576