Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05365 ATGGAGATTCACTACAGTAGCAGTTACTTCGAAAGGCGCCCCATAATCAGGTCCAATGCGCCAGCTGCTAAATGGGTTAAAGAATGGGTTCCCCAAGATGTTGTAGCCACTGGGGGGAAATGCATGCTCTTAAGATGGGTTAGAGAGGATGCCTTGAAGGCATTGCAGGAAAAGGAAAAAGAACCGGCTGTACCTGAACCGGAACCAGAGCCAACTACTGAAGTGCTTTTTCTTTGCAGCTATGAAGGATGTGGAAAGACGTTCATTGATGCCGGTGCATTGAGGAAACATTCTCACATTCATGGAGAGAGACAATTTGTTTGTCACTATGAGGGGTGCGGAAAGAAATTTCTTGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCACACAGGGGAGAGGGATTTTGTGTGTCCCCATGAAGGCTGTGGTAAGGCCTTCTCTCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGTCCGTACTCAGAATGCGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCCTCTCACCATGAAAAGAATGCAGCACTGGAGGTGCCGAAGTATACTCCGCCTTTAGAGAGACAACCAAAAACTACTAAACATTCTGGCACAGCATATGGTTCTGCATCGTCAGATCGCCCCTATGCATGCCCTTATGAAGGATGTGAAAAAGCCTACATTCATGAATACAAGCTTAAACTCCATTTGAAGAGGGAACATCCTGGGCATATGTCTGATGAAAATGCAGAGCATGCTCAAGCTAATCTTGATAATGAAATGGATGAAGCAAGCGATCAAGATGCCTATGGTGGCAAACGGTCAAATGGTAAAATTCAGAAGCAAAGTAAGCTAAAACCAAACCTTAAGTTGCCTCCTTCCAAAATCACCAAACGCAAAGCACCGCCACCTACTCCTGCCACCATAGCCGTAACAAAGAAACCTTGGTCTGTGAATGTGAGAGAGGAGGCTTACAACGAAGAAGACAGCGAAGAAACAGAAGAGGAGGATCGCGACAATGTTGAAGATGGTTGGAGATATGCTGGCAACAATGACGACGATGATGAAGAAACAGAATATGAAGACTGA 1128 0.4406 MEIHYSSSYFERRPIIRSNAPAAKWVKEWVPQDVVATGGKCMLLRWVREDALKALQEKEKEPAVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYSECGKRYAHEYKLKNHIASHHEKNAALEVPKYTPPLERQPKTTKHSGTAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHMSDENAEHAQANLDNEMDEASDQDAYGGKRSNGKIQKQSKLKPNLKLPPSKITKRKAPPPTPATIAVTKKPWSVNVREEAYNEEDSEETEEEDRDNVEDGWRYAGNNDDDDEETEYED 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05365 375 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Arst3g05365 375 SMART c2h2final6 136 160 IPR013087 -
Arst3g05365 375 SMART c2h2final6 166 190 IPR013087 -
Arst3g05365 375 SMART c2h2final6 229 254 IPR013087 -
Arst3g05365 375 SMART c2h2final6 77 101 IPR013087 -
Arst3g05365 375 SMART c2h2final6 106 130 IPR013087 -
Arst3g05365 375 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Arst3g05365 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Arst3g05365 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Arst3g05365 375 MobiDBLite consensus disorder prediction 209 223 - -
Arst3g05365 375 Gene3D Classic Zinc Finger 77 102 - -
Arst3g05365 375 Gene3D Classic Zinc Finger 134 161 - -
Arst3g05365 375 FunFam zinc finger transcription factor YY1 77 102 - -
Arst3g05365 375 MobiDBLite consensus disorder prediction 192 226 - -
Arst3g05365 375 FunFam Zinc finger transcription factor YY1 204 271 - -
Arst3g05365 375 Gene3D Classic Zinc Finger 103 133 - -
Arst3g05365 375 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Arst3g05365 375 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Arst3g05365 375 FunFam Zinc finger protein 410 134 161 - -
Arst3g05365 375 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Arst3g05365 375 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Arst3g05365 375 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Arst3g05365 375 Coils Coil 260 280 - -
Arst3g05365 375 MobiDBLite consensus disorder prediction 274 375 - -
Arst3g05365 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Arst3g05365 375 FunFam Putative zinc finger protein 143 103 133 - -
Arst3g05365 375 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Arst3g05365 375 FunFam zinc finger transcription factor YY1 163 194 - -
Arst3g05365 375 Gene3D Classic Zinc Finger 162 191 - -
Arst3g05365 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Arst3g05365 375 MobiDBLite consensus disorder prediction 338 352 - -
Arst3g05365 375 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Arst3g05365 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Arst3g05365 375 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 359 - -
Arst3g05365 375 Gene3D Classic Zinc Finger 206 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05365 Arst-Chr3 128626960 128629500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05365 10 361 C2H2 Transcription Factor Family AT4G06634 65.027 1.10e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst3g05365 zf-C2H2 0.00037 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05365 - - zju:107412546 598.586