Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05293 ATGCGTGTTGTTACAACAGAGGCACCAACAACAGTAGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTGAGCCAGCGCAACCACATCATTGCAGAAGAAACAGATCCAAGGCCACAAATTCAATCCACAAGGTGCAAGTCCACCATTTCCTCCCTGCTCCTCTCCACATTCTCCAACAACAGCAATGATGGCGGGTCACAGAGCAGGAAAAAGAGCAACTTTTCAGCAGCAGCGACGTTGAGGGGGCTGGGGTGCACGGCGGGGGCGCCGCAGGAGGTATCGGTGCCGGCGGTGATTCGAAACTCGGCGGAATGGGAAGGAAAGAAGGTGAGAAAGAAGAAGCACAAGAGAAGCAGCAAGGGAAGTTGCAGCAATAATGGCGTGGATGTGGATTTTCAAGATGTGTGGTGTGGCACCGCACACGGAATAGGGTTCTCTGCCGATTGTGTTGTTGGCACTTCCAGGAAGAATGCCTCTTCTTCTTCACGACCCAAAATTGATGTTCACAAAATCAATCACAGACAGCGTTCATCTTCTTGTTTGGGAAGGCGCAGTGTGAACCCAGAAACCATCTCGCTTCTCGACACTGATCCTAGCGACGTCTTCACTCCGCGCTCTGCCTCCTCCGAGTTCGCATACTATCGCCACCTTCCAGATCCTTCCACCGATGCTTTTCCTGAGATTATGATGCTTCAAGGAGGTATAATCATGGGGAGTAGATACTCACACGATCAATTCAGAGATTTGAGACTTGATGTTGATAACATGTCCTATGAACAATTGCTTGAGCTCGGTGAGAGAATTGGTTATGTCAACACTGGACTTAAAGAAAATGAGATGGGTGGCAACATAAGGAAAACTAAGCTTCAAATTTCAGATGATGCATCAAACCATCAAGTAGATAAAACGTGTACCATTTGCCAGGAGGAGTATGAAGCTGCTGATGAATTGGGGAGGTTACATTGTGAGCACAGCTATCACTTCCACTGTATAAAACAATGGGTTGCTCACAAGAATTTCTGTCCAGTGTGTAAGCAACAAGTTGTGGCTCGCAACAATTGA 1068 0.4747 MRVVTTEAPTTVAEHIKWRRPRNQLSQRNHIIAEETDPRPQIQSTRCKSTISSLLLSTFSNNSNDGGSQSRKKSNFSAAATLRGLGCTAGAPQEVSVPAVIRNSAEWEGKKVRKKKHKRSSKGSCSNNGVDVDFQDVWCGTAHGIGFSADCVVGTSRKNASSSSRPKIDVHKINHRQRSSSCLGRRSVNPETISLLDTDPSDVFTPRSASSEFAYYRHLPDPSTDAFPEIMMLQGGIIMGSRYSHDQFRDLRLDVDNMSYEQLLELGERIGYVNTGLKENEMGGNIRKTKLQISDDASNHQVDKTCTICQEEYEAADELGRLHCEHSYHFHCIKQWVAHKNFCPVCKQQVVARNN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05293 355 SMART ring_2 306 346 IPR001841 -
Arst3g05293 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 352 IPR013083 -
Arst3g05293 355 Pfam Ring finger domain 305 347 IPR001841 -
Arst3g05293 355 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
Arst3g05293 355 FunFam E3 ubiquitin-protein ligase rnf12-A 273 352 - -
Arst3g05293 355 SUPERFAMILY RING/U-box 305 351 - -
Arst3g05293 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 79 350 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05293 Arst-Chr3 128040467 128042565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05293 12 261 C3H Transcription Factor Family AT1G73760 39.858 9.26e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05293 - - gmx:100788837 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g03411 5 93001002 93004724 Arst3g05293 3 128040467 128042565 ECH
Arst3g05293 3 128040467 128042565 Arst3g05293 3 128040467 128042565 ECH