Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05272 ATGGTGGCGAAATCAGGCGAGAATGGCTGTGTGGCTCCGTTCCTTCAGAAGTGCTACGATATGGTCTCCGACCCTTCCACCGACTCCGTCATCTCTTGGACCCATCAAGGCCACACCTTCCTCATCTCCGATATCACCCAATTCTCCCTCACTCTTCTCCCCAATTACTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAACATCTACGGCTTCAGGAAAATTGATACGGACCGCTGGGAATTCGCCAATGACAACTTTGTGAAGGGTCAAAAGCATTTGTTGATCAATATTCGGAGAAGGAAACATCCGCACGCTGCAGATCATCAAAAGCCAGACAATTCTGATGAAGCACCAGCAAATGATGGGCTTTGGAAGGAAGTGGAGAATCTAAAATCCAACAAGAATTCCCTCATGCAGGAGTTGGTTAAACTCAGGCAGCATCAAGAATCTGCCGAGAATAAGCTGCTACTCCTCACTGATCGCCTTCAAGGAATGGAGAAGCATCAGCAGCAGATGCTATCATTCTTGGTCATGGTTGTTCAAAGTCCCGGCTTCATGGTTCAACTCCTTCAGCCTAACGAAAACAATTGGCGAATGGCCGAACTTGGAGATGGGAATGGGATGATAGTAAAGTATAAACCTCCGGTGCCCGAAAATCTCAAGCCTGTAGTTCCCCGATCACCCACTTTCGAGAAGCAACCGGAACCTGAGCTTTCTTTCGATGGTTTAAAAGACTTGTGCATCAGTTCTGAGTTCTTGAAAGTTCTTATGGATGAGAAGTTGTCTCCTTTGGAAAATCATCCTCCATTTCTTCTTCCGGATTTACCCGATGATGGTTCATGGGAGCAACTTTTTCTTGGCAGTCCTTTCTTGCAAAACACTGATGAAGCTGACAAGCCCACTGTCAGCGGAATGGAGATAGAACCCATCACACCCGAAGATCAAACTGAAAAGTCTCAGTCTTTTGAATCTTTGATTCTAGAAATGGAGAAAACTGAAGAGACCGATGCATTGGAATTACGAGCTGATGGAGTTCATTTGGAGGGGTCGGAGAAACTGAAATCTCTAACCAAGCAAATGGAACTTCTGGCTTCTGAAACTGACAATGAAGAGGAGGAGGAAGAGGAAGGAAGGAACTGA 1149 0.4613 MVAKSGENGCVAPFLQKCYDMVSDPSTDSVISWTHQGHTFLISDITQFSLTLLPNYFKHNNFSSFIRQLNIYGFRKIDTDRWEFANDNFVKGQKHLLINIRRRKHPHAADHQKPDNSDEAPANDGLWKEVENLKSNKNSLMQELVKLRQHQESAENKLLLLTDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLQPNENNWRMAELGDGNGMIVKYKPPVPENLKPVVPRSPTFEKQPEPELSFDGLKDLCISSEFLKVLMDEKLSPLENHPPFLLPDLPDDGSWEQLFLGSPFLQNTDEADKPTVSGMEIEPITPEDQTEKSQSFESLILEMEKTEETDALELRADGVHLEGSEKLKSLTKQMELLASETDNEEEEEEEGRN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05272 382 SUPERFAMILY "Winged helix" DNA-binding domain 11 103 IPR036390 -
Arst3g05272 382 MobiDBLite consensus disorder prediction 103 123 - -
Arst3g05272 382 MobiDBLite consensus disorder prediction 109 123 - -
Arst3g05272 382 MobiDBLite consensus disorder prediction 359 382 - -
Arst3g05272 382 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 230 IPR027725 -
Arst3g05272 382 Gene3D - 7 104 IPR036388 -
Arst3g05272 382 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g05272 382 Coils Coil 130 157 - -
Arst3g05272 382 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g05272 382 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g05272 382 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g05272 382 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst3g05272 382 FunFam Heat stress transcription factor B-4 6 104 - -
Arst3g05272 382 Coils Coil 356 376 - -
Arst3g05272 382 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05272 Arst-Chr3 127895069 127896728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05272 11 368 HSF AT1G67970 45.504 5.86e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst3g05272 HSF_DNA-bind 6.1e-30 CL0123