Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05166 ATGGCGGAAGAGGAGTACATTCAGCAACTGAGGTCCAAAGCAACAGAGCTTTTCCTCAGAGAAGAATGGAAGGACTCCATTGACGCCTACTCCAACCTCATCTCTCACTGCACCCACCACCAACAACAACTCTCTCTTCATCACCCAGATCACCTCCAAAAGCTTCACAAATCACTCTGCATTGCCCTCTGCAACCGCGCCGAAGCCAGGTCTCGCCTTCGCGACTTCCATTGCGCCTTGCAAGACTGCGATCGCGCATTGCAGATCGATGCATCGCATTTCAAGACCCTGCTATGCAAAGGTAAGATCCTGCTCTGCCTCAATAGGTACTCGATGGCGCTTGAATGCTTTAAAGCAGCTTTGCTTGACTCCCAAGCTGCTGGGAACTCCGAAACCCTAATTGGGTATGTTGACAAGTGCAAAAAGTTTGAGTTTTTAGCCAGGACAGGGTCCTTGGACCTCTCCGATTGGGTTTCGAATGGGTTTCACGGGAAGCCTCCGGAGCTTGCAGAGTACATTGGTGCGGTGGAGATCAGGAAATCAGATATCAGTGGCCGCGGCCTTTTCGCAACCAAGAACATTGATGCAGGGTCGTTGATCTTGATCACCAGGGCAATTGTAATGGAGAGGAGTATATTGGCAGGTAAGGATTTAAGCGAGGATGCGCAGTTAGCAATGTGGAAGAATTTCATTCAGAAAGTTTCTGAATTTGCAAGGAAATGTTACAAAACCCGGGATTTGATTGGTATGTTGTCAATTGGGGAAGATGAGGAAGAACTTGAGATTCCTGATATAGATTTGTTTAGGCCTGAGAATGTTGGGAACGTGGATTCATGTGAAATGATTGATATGGAGAAGTTGCTGGCCATTTTGGATGTGAATTCACTCACAGAGGATGCTGTTTCGGCCAATGTGTTGAGGAAGAACAATGATTCCTATGGTGTTGGATTGTGGCTATTACCTTCCTTCATCAACCATTCATGCTGTCCAAATTCGCGGCGACTGCATGTTGGGGACTACTTAATAGTTCATGCTTCCAAGGATCTCAAGGCCGGAGAAGAGATCACTTTTGCCTATTTAGATCCGCTTAGTCCTCTGAGCAAGCGAAGGGAGATGTCGATGACTTGGGGGATTCAATGCAAGTGTAAGAGGTGTAGATTTGAAAATGAGGTTTTCACCAAACAAGAGATTAAGGAGATTGAGATTGGACTTGAAAGAGGGATGGATGTTGGTGGTGTGGTTTATAAATTGGAGGAACACATGAAGAGATTGAAGGTTAGGGGAAAAGAGAAGGCCTATTTGAGAGCTTCATTTTGGTCTGCTTATTGTGAGGCTTATAGGTCTGATAGGTCTATGAAGAGGTGGGGAAGGCGCATTCCGGCGATGGATGCCGTGGTGGATAGCGTGGTTGATGTGGTGGGAGGTGATCATAGGCTGCTTAAGATCATGGTGGAGGAGTTGAAGAAAAATGGTGGCGGTGGCAGCGGCCTTGTGGGGATGGAAAAAGCTTTAAAGCTAGCAAGAGATGTGTATGGGAAGGTAGTGAAAAAGCAAGCAATGAAGACACTTGTTGAGTTTTGCGTTGGTGATTGA 1593 0.4664 MAEEEYIQQLRSKATELFLREEWKDSIDAYSNLISHCTHHQQQLSLHHPDHLQKLHKSLCIALCNRAEARSRLRDFHCALQDCDRALQIDASHFKTLLCKGKILLCLNRYSMALECFKAALLDSQAAGNSETLIGYVDKCKKFEFLARTGSLDLSDWVSNGFHGKPPELAEYIGAVEIRKSDISGRGLFATKNIDAGSLILITRAIVMERSILAGKDLSEDAQLAMWKNFIQKVSEFARKCYKTRDLIGMLSIGEDEEELEIPDIDLFRPENVGNVDSCEMIDMEKLLAILDVNSLTEDAVSANVLRKNNDSYGVGLWLLPSFINHSCCPNSRRLHVGDYLIVHASKDLKAGEEITFAYLDPLSPLSKRREMSMTWGIQCKCKRCRFENEVFTKQEIKEIEIGLERGMDVGGVVYKLEEHMKRLKVRGKEKAYLRASFWSAYCEAYRSDRSMKRWGRRIPAMDAVVDSVVDVVGGDHRLLKIMVEELKKNGGGGSGLVGMEKALKLARDVYGKVVKKQAMKTLVEFCVGD 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05166 530 Pfam SET domain 185 359 IPR001214 GO:0005515
Arst3g05166 530 Gene3D SET domain 275 392 IPR046341 -
Arst3g05166 530 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 525 - -
Arst3g05166 530 ProSiteProfiles SET domain profile. 174 360 IPR001214 GO:0005515
Arst3g05166 530 SMART set_7 174 366 IPR001214 GO:0005515
Arst3g05166 530 CDD SET 177 204 - -
Arst3g05166 530 SUPERFAMILY SET domain 175 385 IPR046341 -
Arst3g05166 530 Gene3D Tetratricopeptide repeat domain 4 142 IPR011990 GO:0005515
Arst3g05166 530 CDD SET_SMYD 288 385 - -
Arst3g05166 530 SMART tpr_5 7 40 IPR019734 GO:0005515
Arst3g05166 530 SMART tpr_5 94 126 IPR019734 GO:0005515
Arst3g05166 530 SMART tpr_5 60 93 IPR019734 GO:0005515
Arst3g05166 530 SUPERFAMILY TPR-like 6 121 IPR011990 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Arst3g05166 SET 2.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05166 - - mtr:11446296 802.742