Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05165 ATGGAAGGAAGTAGTAAAAGTTGTGAACTACTACCACCAGGGTTTAGATTCCACCCAACAGATGAGGAGCTAATTGTGTATTACCTTTGTAACCAAGCAACATCAAAGCCCTGCCCTGCTTCCATCATCCCTGAAGTTGACATCTACAAATTTGATCCATGGGAATTGCCAGGGAAGGCTGAGTTTGGGGAGAAAGAATGGTACTTCTTTAGCCCAAGGGACAGGAAGTATCCCAATGGGGTTCGGCCGAACCGCGCAACGGTTTCTGGGTATTGGAAGGCCACAGGGACAGACAAGGCTATTTACAGCAAGTGTAAGCATGTTGGTGTCAAGAAGGCCTTGGTTTTCTACAAGGGTAGACCTCCAAAGGGGATCAAGACTGATTGGATTATGCACGAATATCGTCTTCTTCAACAATCTAATCACAACAGCAGGACCACTGGTTCTATGAGACTGGATGACTGCGTCTTGTGTAGGATATATAAGAAAAAACATGCTGCTAAAGCATTGGATCAAGGACAGGAATACCCAACAACGGTTCAAATTAATCTAAATGCATCAACCAACAATGATGATCAGAAGGAGTTGATGATGATGAAGAATCTTCCAAGGACTTGTTCCCTTACTTATCTTTTGGACATGAATTACTTTGGTCCAATCTCACAGCTATTGTCTGATGGATCCTACAACAACTCATCAACCTTTGAAATATTTCAACATAGCAATAGTGTTGACAACATTGGAATAGTGGATCCTCTTGTCAAAACTCAAATGGTTGAAATGGATGATAGCTATTATGCTCAAGATTCAGGCAAGTCCCAAGTGATGAAACAAGGGAATGATTTAAGAGGATATTACTAA 861 0.417 MEGSSKSCELLPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPGKAEFGEKEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSKCKHVGVKKALVFYKGRPPKGIKTDWIMHEYRLLQQSNHNSRTTGSMRLDDCVLCRIYKKKHAAKALDQGQEYPTTVQINLNASTNNDDQKELMMMKNLPRTCSLTYLLDMNYFGPISQLLSDGSYNNSSTFEIFQHSNSVDNIGIVDPLVKTQMVEMDDSYYAQDSGKSQVMKQGNDLRGYY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05165 286 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 226 - -
Arst3g05165 286 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Arst3g05165 286 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
Arst3g05165 286 ProSiteProfiles NAC domain profile. 11 163 IPR003441 GO:0003677|GO:0006355
Arst3g05165 286 FunFam NAC transcription factor 20 167 - -
Arst3g05165 286 Pfam No apical meristem (NAM) protein 12 136 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05165 Arst-Chr3 127014780 127016018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05165 1 243 NAC Transcription Factor Family AT1G69490 62.151 5.25e-109 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst3g05165 NAM 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05165 - - adu:107489303 384.415