Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05162 ATGGCTATCATTGGGTTTCTCTTGGTTACTTTTCTTACTATGTTCTCCTCAGCTTACGCCAATGGTGGAGCAGGATGGACCAATGCTCATGCTACCTTCTATGGTGGGGGTGATGCATCAGGGACAATGGGTGGGGCTTGTGGATATGGAAACCTCTATAGCCAGGGGTACGGAACAACCACTGCTGCTTTGAGCACTGCACTTTTCAACAATGGCTTGAGCTGTGGCTCTTGCTATGAGATTAAGTGTGTGAATGACCAGAAATGGTGCCTCCCTGGCTCCATTGTGGTCACTGCCACTAACTTCTGCCCTCCAAACAATGCATTGCCAAACAATGCAGGTGGGTGGTGCAACCCTCCTCTTCACCACTTTGATCTAGCTCAGCCTGTGTTCCTCCGCATTGCTCAATACAAAGCTGGAATAGTCCCTGTCGCTTACAGGAGGGTGGCATGCAGGAGAAGAGGAGGAATAAGGTTCACTATTAATGGTCATTCCTACTTCAACCTAGTACTAATCACAAACGTTGGTGGTGCTGGTGATGTTCATTCTGTGTTCATCAAGGGTTCAAAAACCGGTTGGATGCCAATGTCAAGAAACTGGGGACAAAACTGGCAGAGCAACAACTACCTCAATGGCCAAAGCCTCTCTTTCAAGGTCACTACAAGTGATGGCCGTACAGTGGTCTCTAACAATGTTGCCCCAGCTGGTTGGACCTTTGGCCAAACCTACACTGGTGCTCAATTCCACTAG 750 0.4853 MAIIGFLLVTFLTMFSSAYANGGAGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTTTAALSTALFNNGLSCGSCYEIKCVNDQKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVAYRRVACRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSVFIKGSKTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWTFGQTYTGAQFH 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05162 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Arst3g05162 249 Gene3D - 12 152 IPR036908 -
Arst3g05162 249 SMART dpbb_1 61 146 IPR007112 -
Arst3g05162 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Arst3g05162 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Arst3g05162 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Arst3g05162 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Arst3g05162 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Arst3g05162 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Arst3g05162 249 PANTHER EXPANSIN-A15 7 248 IPR002963 GO:0009664
Arst3g05162 249 Pfam Lytic transglycolase 61 146 IPR009009 -
Arst3g05162 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Arst3g05162 249 SUPERFAMILY Barwin-like endoglucanases 11 174 IPR036908 -
Arst3g05162 249 FunFam Expansin 156 248 - -
Arst3g05162 249 FunFam Expansin 14 152 - -
Arst3g05162 249 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Arst3g05162 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Arst3g05162 249 Gene3D - 156 249 IPR036749 -
Arst3g05162 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Arst3g05162 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Arst3g05162 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Arst3g05162 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Arst3g05162 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Arst3g05162 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Arst3g05162 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Arst3g05162 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Arst3g05162 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Arst3g05162 249 CDD DPBB_EXPA_N 25 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05162 Arst-Chr3 126969109 126970771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05162 1 249 Expansin Gene Family AT2G03090 79.920 1.03e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05162 - - gmx:100527059 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g05162 3 126969109 126970771 Arst3g05162 3 126969109 126970771 ECH
Arst3g05162 3 126969109 126970771 Arst8g03963 8 49808838 49810277 ECH