Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05146 ATGAGCGATCATCTGGTGCCTCCGATTCTGCTCCGAGAGCCGAGGACGAGGACGAGGAGGAGGATGAGGAGGCGCCGCTGTTGCAGATGGCGGAGTGCCGCATTTGTCAGGAGGAAGACACCGTCAACAATCTCGAGTCGCCATGTGCTTGCAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCGATGAGAAAGGAGACATTATTTGTGAGATATGTCACAAGCCCTATGAACCTGGTTATACTGCCCCACCACCACGTGCACATCCTGAAGAAACTACCATTGATATAGGGGGAGGTTGGACAATTTCTGGCACACCTTTGGACTTGCGGGATCCTCGTCTCTTGGCAATTGCTGAGGCGGAACGCCAATTCTTGGAAGCAGAGTATGATGGATATGCTGCTTCTAATGCCAGCGGTGCTGCATTTTGCCGATCAGCTGCTCTTATTTTGATGGCTCTTCTACTCTTGAGGCATGCACTTGCAGTCACAGATGAAGATGCCGATGATGATCCATCCACTTTCTTCTCTCTTTTCTTGCTTCGAGCTGCTGGGTTTCTTTTGCCTTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAATTATTTCGCGTGTTATGGTGA 656 0.503 MSDHLVLYVDRLVRPVVPVEPLAQHPAQPSPEPEPPLDEPPAATAGPSDSAPRAEDEDEEEDEEAPLLQMAECRICQEEDTVNNLESPCACSGSLKYAHRKCVQHWCDEKGDIICEICHKPYEPGYTAPPPRAHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALAVTDEDADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQLFRVLW 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05146 258 ProSiteProfiles Zinc finger RING-CH-type profile. 65 125 IPR011016 GO:0008270
Arst3g05146 258 SMART ringv_2 72 119 IPR011016 GO:0008270
Arst3g05146 258 Pfam RING-variant domain 73 118 IPR011016 GO:0008270
Arst3g05146 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 128 IPR013083 -
Arst3g05146 258 MobiDBLite consensus disorder prediction 20 66 - -
Arst3g05146 258 Pfam Protein of unknown function (DUF3675) 124 242 IPR022143 -
Arst3g05146 258 Coils Coil 161 181 - -
Arst3g05146 258 CDD RING_CH-C4HC3_MARCH 73 119 - -
Arst3g05146 258 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 252 IPR033275 -
Arst3g05146 258 SUPERFAMILY RING/U-box 71 123 - -
Arst3g05146 258 MobiDBLite consensus disorder prediction 22 42 - -
Arst3g05146 258 FunFam RING/FYVE/PHD zinc finger protein 61 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05146 Arst-Chr3 126793860 126796417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05146 72 161 C3H Transcription Factor Family AT5G05830 30.208 2.68e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05146 - - ahf:112734090 427.943