Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst3g05145 | ATGAGCGATCATCTGGTGCCTCCGATTCTGCTCCGAGAGCCGAGGACGAGGACGAGGAGGAGGATGAGGAGGCGCCGCTGTTGCAGATGGCGGAGTGCCGCATTTGTCAGGAGGAAGACACCGTCAACAATCTCGAGTCGCCATGTGCTTGCAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCGATGAGAAAGGAGACATTATTTGTGAGATATGTCACAAGCCCTATGAACCTGGTTATACTGCCCCACCACCACGTGCACATCCTGAAGAAACTACCATTGATATAGGGGGAGGTTGGACAATTTCTGGCACACCTTTGGACTTGCGGGATCCTCGTCTCTTGGCAATTGCTGAGGCGGAACGCCAATTCTTGGAAGCAGAGTATGATGGATATGCTGCTTCTAATGCCAGCGGTGCTGCATTTTGCCGATCAGCTGCTCTTATTTTGATGGCTCTTCTACTCTTGAGGCATGCACTTGCAGTCACAGATGAAGATGCCGATGATGATCCATCCACTTTCTTCTCTCTTTTCTTGCTTCGAGCTGCTGGGTTTCTTTTGCCTTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAAAGACAAGAGGCTGCAGCACTGGCGGCAACTCAAGTCGCGTTCGTTTTTCAATCCGGGCAGCGTAGGGGTCTGCAGTTCGCCATTGCACCAGGACCTGCAGTGAGTACACACCAGGAACAAGTGTAG | 755 | 0.5179 | MSDHLVLYVDRLVRPVVPVEPLAQHPAQPSPEPEPPLDEPPAATAGPSDSAPRAEDEDEEEDEEAPLLQMAECRICQEEDTVNNLESPCACSGSLKYAHRKCVQHWCDEKGDIICEICHKPYEPGYTAPPPRAHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALAVTDEDADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVFQSGQRRGLQFAIAPGPAVSTHQEQV | 291 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst3g05145 | 291 | SUPERFAMILY | RING/U-box | 71 | 123 | - | - | |
| Arst3g05145 | 291 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 128 | IPR013083 | - | |
| Arst3g05145 | 291 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 252 | IPR033275 | - | |
| Arst3g05145 | 291 | FunFam | RING/FYVE/PHD zinc finger protein | 61 | 129 | - | - | |
| Arst3g05145 | 291 | Pfam | RING-variant domain | 73 | 118 | IPR011016 | GO:0008270 | |
| Arst3g05145 | 291 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 65 | 125 | IPR011016 | GO:0008270 | |
| Arst3g05145 | 291 | SMART | ringv_2 | 72 | 119 | IPR011016 | GO:0008270 | |
| Arst3g05145 | 291 | MobiDBLite | consensus disorder prediction | 20 | 66 | - | - | |
| Arst3g05145 | 291 | Coils | Coil | 161 | 181 | - | - | |
| Arst3g05145 | 291 | CDD | RING_CH-C4HC3_MARCH | 73 | 119 | - | - | |
| Arst3g05145 | 291 | Pfam | Protein of unknown function (DUF3675) | 124 | 242 | IPR022143 | - | |
| Arst3g05145 | 291 | MobiDBLite | consensus disorder prediction | 22 | 42 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst3g05145 | Arst-Chr3 | 126793647 | 126796416 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst3g05145 | 46 | 106 | C3H Transcription Factor Family | AT1G11020 | 39.062 | 2.34e-06 | 46.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst3g05145 | - | - | ahf:112734090 | 495.352 |