Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05144 ATGGACTTGACCTCAAACAATACCCACACCTTAGATTCAGATACTAAAACCCCACCACCAACCCAACCCACCAACACCAACACCCTAAAGTCACTATCTTTAACCAACGGCACACACAACAACAACCACCACCGCCACCAGTCCACCACCAGGCTTCCTCCGCCGTCCATGGCGGTTATTTCCTACAAAGAATGTCTCAAGAACCACGCCGCCAGCATAGGTGGCCATGCACTTGACGGTTGCGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGACCCTCGCTCCCTCAAGTGCGCCGCCTGCGGCTGCCATCGCAACTTCCACCGCCGTGACCCTCCAGAGCCTTCCAGCACCACCACCCCCACCTTTTTAAACTGCTTCTACTCCCCGTCCACCGGCACCAACACTGCACCACCACCGGCGCCGCCGCAACCTCTCCCTCATCGCGGCATGAGCCAAAGTACAAGCCCAAGCCAAAGCTCAAGCCCAAGCCAGAGCCCTAGCCCGATGTCAAGCCCTTCTTCACCGCCACCACTGTCTCACGTGCCACCACCACCACCACCATCAGCACCAGGTTCTTACCACTCCTCCGCACCGCACATGCTCTTAGCCTTAGGCACCGCGTATTCTGCAGTTCCTTCAGATCACGAGCACCAACAGCTTCATCGAAACTCCTTCAACAACAGCAACAACTTCTCTCCTGTGGTTCTGAACGCCAACAGTGGCGGCAGTAATAGTAATAGCAGTAAGAACAAGAGGTACAGAACCAAGTTCAGCCAAGAACAGAAGGAGAAGATGTACAGATTCTCTGAGAAATTGGGTTGGAGAATGAACAACAAAGGTGATGATTCTCTTGTTCAGGAGTTTTGTAATGACATTGGTGTCCCTAGAGGTGTCTTCAAGGTTTGGATGCACAATAACAAGAACACTTTCAACAAGAAGAGATCCTCTTCTTCCGAACCTCCTCTTCCTCCTCCTGCTGCTGGAAACAACCACATCAATGATCATGATCAGAAAATCAATGCTACTGCTGCTGCTGATGGTAGTAATAATAATAATAATAAGAATGGAGATATCAATAATGTTGTTTCTCATGTTCCTATCAATGCCTTGTCATCTTAA 1128 0.508 MDLTSNNTHTLDSDTKTPPPTQPTNTNTLKSLSLTNGTHNNNHHRHQSTTRLPPPSMAVISYKECLKNHAASIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPPEPSSTTTPTFLNCFYSPSTGTNTAPPPAPPQPLPHRGMSQSTSPSQSSSPSQSPSPMSSPSSPPPLSHVPPPPPPSAPGSYHSSAPHMLLALGTAYSAVPSDHEHQQLHRNSFNNSNNFSPVVLNANSGGSNSNSSKNKRYRTKFSQEQKEKMYRFSEKLGWRMNNKGDDSLVQEFCNDIGVPRGVFKVWMHNNKNTFNKKRSSSSEPPLPPPAAGNNHINDHDQKINATAAADGSNNNNNKNGDINNVVSHVPINALSS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05144 375 MobiDBLite consensus disorder prediction 109 199 - -
Arst3g05144 375 MobiDBLite consensus disorder prediction 171 195 - -
Arst3g05144 375 MobiDBLite consensus disorder prediction 215 264 - -
Arst3g05144 375 Gene3D - 239 316 - -
Arst3g05144 375 Pfam ZF-HD protein dimerisation region 60 113 IPR006456 -
Arst3g05144 375 SUPERFAMILY Homeodomain-like 240 315 IPR009057 -
Arst3g05144 375 FunFam Zinc-finger homeodomain protein 2 240 315 - -
Arst3g05144 375 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 32 312 - -
Arst3g05144 375 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 113 IPR006456 -
Arst3g05144 375 MobiDBLite consensus disorder prediction 150 170 - -
Arst3g05144 375 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 113 IPR006456 -
Arst3g05144 375 MobiDBLite consensus disorder prediction 312 337 - -
Arst3g05144 375 MobiDBLite consensus disorder prediction 1 55 - -
Arst3g05144 375 MobiDBLite consensus disorder prediction 225 255 - -
Arst3g05144 375 NCBIfam homeobox domain, ZF-HD class 254 311 IPR006455 -
Arst3g05144 375 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05144 Arst-Chr3 126767330 126769083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05144 60 313 ZF-HD Transcription Factor Family AT1G69600 43.359 2.47e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Arst3g05144 ZF-HD_dimer 3.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05144 - - adu:107481218 563.533