Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05136 ATGGAAGGTGAGAAGCTTGACGAGATCATGTTACCAGGTTTCAGGTTCCACCCAACTGATGAGGAGCTTGTCGGGTTCTACCTTAAGAGAAAGATTCAGCAAATGCCTCTGTCCATTGAGCTCATCAAGCAACTTGATATCTATAAATATGATCCTTGGGATCTTCCAATGGCAGGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGGAACAGTGCAAGGCCAAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCCACAGGGACTGACAGGCCTATATACTCCTCAGAGGGTTCAAAGTGCATTGGACTCAAGAAATCTTTGGTCTTCTACAAAGGCAGAGCTGCCAAAGGTGTTAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCTTCTCTTGTTGACTCTTCTTCATCCGACAAGACCACTATTCCTGCTAATGACTCTTGGGCAATCTGCAGAATATTCAAGAAAACAAATGCTACAGCTCAAAGAGCACTCTCTCACTCTTGGGTTTCTACCTTACCTGAAACAACACCAACCACCACTACCAATGATACAGATCACATATTCAACATGCCAACGATGATGGCAAAGAAAACTAGCTTCATGACCCAGTTTTGCACTAACTACACTAGTGACACACAAATCCAAGATGTTGCATCATCTTATAAACCACCCTTTATTAATATTAATCCATTGCTTTACAAGCAGTTTGATCATCATCATCATCAGTTACCACCTATTATTTCAAATGGAGATCTTATAAGCAACGACTGCTTAATACCCTCTTCTACTACTCCACTTGAAACATCCTCTAATAGTGCAAAACCTACTATGGATTTTTCTTCATTGTTGCTGAACATGTCATCTTCTGTTCTTGGAGATTTTGCTGGAAAGACATCGTCGTCGTCCTCATCCCAAGAGGGTACAGCAGCAGCAGCAACAGCAACAACAATCACGAGTAGCTTCGGTGGTGGAATGCAGGAGCACTACCCAACAATACCATTACTGCGTCAGATGCATCAAGGGAACAACAACAACAACAACAACATTGGCATCAACAACAACAACGTGTCTGCTGGCGGTGAAGAACAAGAGTTGGAGAAAGTTGGATCCATTGTTGGGTTCCCATTCATGAACATTGGGGATGCATGGAAGTCAAATATGCTTTGGGATACTTCTTGTCCCTTGTGA 1215 0.4263 MEGEKLDEIMLPGFRFHPTDEELVGFYLKRKIQQMPLSIELIKQLDIYKYDPWDLPMAGTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLVDSSSSDKTTIPANDSWAICRIFKKTNATAQRALSHSWVSTLPETTPTTTTNDTDHIFNMPTMMAKKTSFMTQFCTNYTSDTQIQDVASSYKPPFININPLLYKQFDHHHHQLPPIISNGDLISNDCLIPSSTTPLETSSNSAKPTMDFSSLLLNMSSSVLGDFAGKTSSSSSSQEGTAAAATATTITSSFGGGMQEHYPTIPLLRQMHQGNNNNNNNIGINNNNVSAGGEEQELEKVGSIVGFPFMNIGDAWKSNMLWDTSCPL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05136 404 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 276 - -
Arst3g05136 404 Gene3D NAC domain 19 169 IPR036093 GO:0003677|GO:0006355
Arst3g05136 404 FunFam NAC domain-containing protein 35 19 167 - -
Arst3g05136 404 ProSiteProfiles NAC domain profile. 10 164 IPR003441 GO:0003677|GO:0006355
Arst3g05136 404 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
Arst3g05136 404 Pfam No apical meristem (NAM) protein 12 136 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05136 Arst-Chr3 126674427 126676236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05136 4 189 NAC Transcription Factor Family AT1G26870 79.058 3.55e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst3g05136 NAM 2.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05136 - - gmx:100815365 437.958