Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05135 ATGGAAGGTGAGAAGCTTGACGAGATCATGTTACCAGGTTTCAGGTTCCACCCAACTGATGAGGAGCTTGTCGGGTTCTACCTTAAGAGAAAGATTCAGCAAATGCCTCTGTCCATTGAGCTCATCAAGCAACTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAAGTGGCAGGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGGAACAGTGCAAGGCCAAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCCACAGGGACTGACAGGCCTATATACTCCTCAGAGGGTTCAAAGTGCATTGGACTCAAGAAATCTTTGGTCTTCTACAAAGGCAGAGCTGCCAAAGGTGTTAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCTTCTCTTGTTGACTCTTCTTCATCCGACAAGACCACTATTCCTGCTAATGACTCTTGGGCAATCTGCAGAATATTCAAGAAAACAAATGCTACAGCTCAAAGAGCACTCTCTCACTCTTGGGTTTCTACCTTACCTGAAACAACACCAACCACCACTACCAATGATACAGATCACATATTCAACATGCCAACGATGATGGCAAAGAAAACTAGCTTCATGACCCAGTTTTGCACTAACTACACTAGTGACACACAAATCCAAGATGTTGCATCATCTTATAAACCACCCTTTATTAATATTAATCCATTGCTTTACAAGCAGTTTGATCATCATCATCATCAGTTACCACCTATTATTTCAAATGGAGATCTTATAAGCAACGACTGCTTAATACCCTCTTCTACTACTCCACTTGAAACATCCTCTAATAGTGCAAAACCTACTATGGATTTTTCTTCATTGTTGCTGAACATGTCATCTTCTGTTCTTGGAGATTTTGCTGGAAAGACATCGTCGTCGTCCTCATCCCAAGAGGGTACAGCAGCAGCAGCAACAGCAACAACAATCACGAGTAGCTTCGGTGGTGGAATGCAGGAGCACTACCCAACAATACCATTACTGCGTCAGATGCATCAAGGGAACAACAACAACAACAACAACATTGGCATCAACAACAACAACGTGTCTGCTGGCGGTGAAGAACAAGAGTTGGAGAAAGTTGGATCCATTGTTGGGTTCCCATTCATGAACATTGGGGATGCATGGAAGTCAAATATGCTTTGGGATACTTCTTGTCCCTTGTGA 1218 0.4261 MEGEKLDEIMLPGFRFHPTDEELVGFYLKRKIQQMPLSIELIKQLDIYKYDPWDLPKVAGTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLVDSSSSDKTTIPANDSWAICRIFKKTNATAQRALSHSWVSTLPETTPTTTTNDTDHIFNMPTMMAKKTSFMTQFCTNYTSDTQIQDVASSYKPPFININPLLYKQFDHHHHQLPPIISNGDLISNDCLIPSSTTPLETSSNSAKPTMDFSSLLLNMSSSVLGDFAGKTSSSSSSQEGTAAAATATTITSSFGGGMQEHYPTIPLLRQMHQGNNNNNNNIGINNNNVSAGGEEQELEKVGSIVGFPFMNIGDAWKSNMLWDTSCPL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05135 405 ProSiteProfiles NAC domain profile. 10 165 IPR003441 GO:0003677|GO:0006355
Arst3g05135 405 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 276 - -
Arst3g05135 405 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Arst3g05135 405 Gene3D NAC domain 19 170 IPR036093 GO:0003677|GO:0006355
Arst3g05135 405 Pfam No apical meristem (NAM) protein 12 137 IPR003441 GO:0003677|GO:0006355
Arst3g05135 405 FunFam NAC domain-containing protein 35 19 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05135 Arst-Chr3 126674427 126676236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05135 4 190 NAC Transcription Factor Family AT1G26870 79.581 1.47e-106 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst3g05135 NAM 6.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05135 - - gmx:100815365 442.965