Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05112 ATGGCTGATCCTCAGAAAGCTGGTCCTGTTGAGAGGGATATAGAGCAGGCTCTTACATCGCTTAAAAAAGGATCATATCTGCTAAAGTATGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGATGAGTCTCTACTCTTGTGGTACTCTGGAAAGGAAGAGAAACAACTTAAACTCAGTACTGTTTCAAAGATCATTCCAGGACAACGAACTGCTACATTTCAGCGGTATCCTCGGCCTGAAAAAGAATATCAGTCATTTTCCCTTATATACAACGATAGATCCTTGGATTTGATATGTAAGGACAAAGAGGAGGCTGAGATATGGTTTGTCGGTCTTAAGGCATTAGTTACTCGAGGTAATACCAACAGTCAAACGTGGAAATTCGAACCATGTGAAAGTCCATATCCTGGAAGTCCCCGTGCTGGCACACGCAAATCTGCTCCATCAAGTTCACCATTTGACCCCAGATATACCAATGGAGTTGCTTCAGACAATTCTAATCAAAATAGATGGGTAAAGGCTTTCTCGGAAATTATTTCTTACACTGGAGCTAACAAGAGTTCAATTCAAGTCGAGTTGATTCCAAATTCCACTTTGTCTCCTGGGTCTGTGGATGAATCAAGTAATCGAAACTCTGCATCTGAGGCAGTTCGAGTTAGTTTATCCAGTGTTGTTAGTTCATCTAGCCATGGTTCTTGTCATGAGGATTTTGAGGCCTTAGGTGATGTTTTTATTTGGGGAGAAGGTATTGGTGATGGAATTGTTGGTGGTGGTGTGCGTAGAGTTGGAACCATATCCAATTCTGAGATGGATGCATTCCTCCCTAAGGCTTTGGAATCAAAAGTAGTTCTAGATGTTCATAGTATCAGTTGTGGCCACAAACATGCTGTTCTAGTTACCAAGCAAGGAGAAATATTTAGTTGGGGAGAGGAATCAGGAGGTAGACTTGGACATGGTGTAGAAGTGGATGTTCTTCACCCTAAGCCCATTGAAACTCTTAGCGGCATTAATATAGAATTAGTAGCATGTGGAGAATATCATAGTTGTGCTGTTACGTATTCTGGGGATCTTTATACTTGGGGCGATGGTACTCACAACTCTGGCTTGCTTGGGCATGAAAACAATGTCAGTCACTGGATTCCTAAGAAAGTAGGTGGTAGCTTGGAGGGTTTACATGTATCATATGTGTCCTGTGGCCCATGGCACACAGCTATTGTTACATCAGCTGGACAGTTGTTTACATTTGGGGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCTCAATAGCACAAATATTCCTAGAGAAGTGGAAGCTTTGAAGGGGTTGAGAACAACCAGGGTTTCCTGTGGTGTTTGGCACACTGCTGCAATTGTTGAGGTAACACACAAATCTAAGGAATCTCCTACACACTCTACTATTGGAACACTTTTCACCTGGGGTGATGGAGATAAATTGCAACTTGGACATGTTGGTAGTGAACCTACACTAGTTCCTGAGCGTGTGATTGCATTGGATAATGAAAACATTTGTCGAGTGGCTTGTGGCCACAGTCTTACAATTGCATTGACAACCTCAGGACATGTATATACAATGGGTAGTACAGCTTATGGACAACTTGGCTGTCCTGCAGCTGATGGAAAAGTCCCCACACGTGTTAAAGATCAACTTGCTGACTGTTTTGTGGAAGATATTGCCTGTGGTTCTTATCATGTTGCAGCCCTAACTTCAAAAGCAGAGGTTTATACTTGGGGAAAAGGTTTGAATGGGCAATTAGGTCATGGAGACAATGATCACCGGAATAAACCCACTCTTGTTCAGTTTTTGAAAGACAAGCAAGTGAAAACCGTCGTTTGTGGTTCAAACTTCACTGCTGTTGTGTGTATTCATAAATGGGTATCAAGCACTGACCATTCTCTATGTTCTGGTTGTCGTAATCCATTTGGATTCAGAAGAAAACGTCATAATTGTTACAACTGTGGGCTTGTTTTTTGCAAAGGATGCACAAACAAGAAATCTATAAAAGCTTCCCTTGCTCCAGACTCCAACAAGCCATATCGGGTTTGTGATGATTGTTACTCTAAACTTAAGAAAGCTTCAGAAACAGTTCCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCATGACAACAGTAAGGTCACTAAATTACAGGAAAAGCTATTAAGGCTTTCATCCTTTGGTTCTTTTACTCAATCAGAAAGCAGTCCATCAAAGCCTCCAGAATCACATGATACCCATGTTTTTCCATCTTTGAATGGAAAATTGCATGTGGGGATTTATGGTCCTATAAAATCATCAAATACTCCTTCTCTGGTATCTAAGAAAAACATTTCAGTTTCTGAGCCTGCTGCAAGAATCTCTTGCCAATCAACATCACCGGCTTCTTCAAAGTGTAGCCCACGACAATCTTGTGAAGATAACCATGATGATCCAAAGCTCAAAAATGACATTCTAACTCAAGAAGTCATTGCTTTAAGGGCACAGGTTGAAGAGCTTACTCTTAAGTCGAAAAGTCTAGAGGCTGAACTCGAGCGAACATCACAGCGATTGAAGGAAGTGACAGCAGTAGCTGCAGATGAAGCTGAAAAGTGTAAATCTGCAAAAGAGGTTATAAAATCATTGACTGCTCAGTTGAAGGAAATGGTGCAAGGACCTCCAGAAGGACATAAAGCAAATGCTGACACCATAGCAACTTCTTATGCTGAAACCACTAATAACATTCGAGATCTATCTTTGGTTGAGAACCATACAACAAACACTATAAAGGAATCCAACAGCAATACAGCAAATAGAACATTATCTAATGGTGCCAAAGCACAAAGTGGAAAGGCAGAGCGGGTGGTGCAGGATGAACCAGGTGTGTACATAACTTTGTCTCCGCTGCCAGGTGGAGGTAATGAACTAAAGCGTGTTCGCTTCAGTCGGAGGCATTTTACAGAAGAAGAAGCTGAGAAGTGGTGGGCTGAAAATGGAGTCAAAATACTGGAGCGGCATAACATAGTTTCTTCATAG 3054 0.4188 MADPQKAGPVERDIEQALTSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFVGLKALVTRGNTNSQTWKFEPCESPYPGSPRAGTRKSAPSSSPFDPRYTNGVASDNSNQNRWVKAFSEIISYTGANKSSIQVELIPNSTLSPGSVDESSNRNSASEAVRVSLSSVVSSSSHGSCHEDFEALGDVFIWGEGIGDGIVGGGVRRVGTISNSEMDAFLPKALESKVVLDVHSISCGHKHAVLVTKQGEIFSWGEESGGRLGHGVEVDVLHPKPIETLSGINIELVACGEYHSCAVTYSGDLYTWGDGTHNSGLLGHENNVSHWIPKKVGGSLEGLHVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDLNSTNIPREVEALKGLRTTRVSCGVWHTAAIVEVTHKSKESPTHSTIGTLFTWGDGDKLQLGHVGSEPTLVPERVIALDNENICRVACGHSLTIALTTSGHVYTMGSTAYGQLGCPAADGKVPTRVKDQLADCFVEDIACGSYHVAALTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVQFLKDKQVKTVVCGSNFTAVVCIHKWVSSTDHSLCSGCRNPFGFRRKRHNCYNCGLVFCKGCTNKKSIKASLAPDSNKPYRVCDDCYSKLKKASETVPLVQTPSLRSVSLHDNSKVTKLQEKLLRLSSFGSFTQSESSPSKPPESHDTHVFPSLNGKLHVGIYGPIKSSNTPSLVSKKNISVSEPAARISCQSTSPASSKCSPRQSCEDNHDDPKLKNDILTQEVIALRAQVEELTLKSKSLEAELERTSQRLKEVTAVAADEAEKCKSAKEVIKSLTAQLKEMVQGPPEGHKANADTIATSYAETTNNIRDLSLVENHTTNTIKESNSNTANRTLSNGAKAQSGKAERVVQDEPGVYITLSPLPGGGNELKRVRFSRRHFTEEEAEKWWAENGVKILERHNIVSS 1017
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05112 1017 Gene3D - 188 471 IPR009091 -
Arst3g05112 1017 CDD FYVE_like_SF 646 698 - -
Arst3g05112 1017 Coils Coil 829 891 - -
Arst3g05112 1017 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 246 307 IPR000408 -
Arst3g05112 1017 MobiDBLite consensus disorder prediction 798 815 - -
Arst3g05112 1017 PRINTS Chromosome condensation regulator RCC1 signature 401 417 IPR000408 -
Arst3g05112 1017 PRINTS Chromosome condensation regulator RCC1 signature 360 376 IPR000408 -
Arst3g05112 1017 PRINTS Chromosome condensation regulator RCC1 signature 579 600 IPR000408 -
Arst3g05112 1017 PRINTS Chromosome condensation regulator RCC1 signature 521 539 IPR000408 -
Arst3g05112 1017 PRINTS Chromosome condensation regulator RCC1 signature 417 431 IPR000408 -
Arst3g05112 1017 PRINTS Chromosome condensation regulator RCC1 signature 310 326 IPR000408 -
Arst3g05112 1017 ProSiteProfiles BRX domain profile. 958 1013 IPR013591 -
Arst3g05112 1017 Pfam Transcription factor regulating root and shoot growth via Pin3 958 1012 IPR013591 -
Arst3g05112 1017 CDD PH_PLC_plant-like 12 122 - -
Arst3g05112 1017 MobiDBLite consensus disorder prediction 131 169 - -
Arst3g05112 1017 Pfam Transcription factor BRX N-terminal domain 873 896 IPR027988 -
Arst3g05112 1017 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 640 702 IPR017455 -
Arst3g05112 1017 MobiDBLite consensus disorder prediction 148 169 - -
Arst3g05112 1017 Pfam Regulator of chromosome condensation (RCC1) repeat 585 632 IPR000408 -
Arst3g05112 1017 Pfam Regulator of chromosome condensation (RCC1) repeat 480 528 IPR000408 -
Arst3g05112 1017 Pfam Regulator of chromosome condensation (RCC1) repeat 415 463 IPR000408 -
Arst3g05112 1017 Pfam Regulator of chromosome condensation (RCC1) repeat 359 410 IPR000408 -
Arst3g05112 1017 Pfam Regulator of chromosome condensation (RCC1) repeat 531 580 IPR000408 -
Arst3g05112 1017 Pfam Regulator of chromosome condensation (RCC1) repeat 308 356 IPR000408 -
Arst3g05112 1017 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 532 583 IPR000408 -
Arst3g05112 1017 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 453 463 IPR000408 -
Arst3g05112 1017 Pfam FYVE zinc finger 636 702 IPR000306 GO:0046872
Arst3g05112 1017 SUPERFAMILY FYVE/PHD zinc finger 636 711 IPR011011 -
Arst3g05112 1017 Gene3D - 13 130 IPR011993 -
Arst3g05112 1017 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 584 635 IPR000408 -
Arst3g05112 1017 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 480 531 IPR000408 -
Arst3g05112 1017 FunFam PH, RCC1 and FYVE domains-containing protein 1 217 468 - -
Arst3g05112 1017 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 308 359 IPR000408 -
Arst3g05112 1017 Gene3D - 476 648 IPR009091 -
Arst3g05112 1017 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 294 304 IPR000408 -
Arst3g05112 1017 SMART fyve_4 632 703 IPR000306 GO:0046872
Arst3g05112 1017 SUPERFAMILY RCC1/BLIP-II 246 637 IPR009091 -
Arst3g05112 1017 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 360 414 IPR000408 -
Arst3g05112 1017 MobiDBLite consensus disorder prediction 798 826 - -
Arst3g05112 1017 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Arst3g05112 1017 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 891 - -
Arst3g05112 1017 SUPERFAMILY PH domain-like 13 121 - -
Arst3g05112 1017 MobiDBLite consensus disorder prediction 939 958 - -
Arst3g05112 1017 MobiDBLite consensus disorder prediction 939 953 - -
Arst3g05112 1017 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 708 IPR013083 -
Arst3g05112 1017 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 415 466 IPR000408 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Arst3g05112 Arst-Chr3 126469373 126477381 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05112 956 1014 Major Intrinsic Protein MIP AT1G31880 52.542 8.31e-14 72.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05112 - - lang:109355968 1338.55