Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05111 ATGGCTGATCCTCAGAAAGCTGGTCCTGTTGAGAGGGATATAGAGCAGGCTCTTACATCGCTTAAAAAAGGATCATATCTGCTAAAGTATGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGATGAGTCTCTACTCTTGTGGTACTCTGGAAAGGAAGAGAAACAACTTAAACTCAGTACTGTTTCAAAGATCATTCCAGGACAACGAACTGCTACATTTCAGCGGTATCCTCGGCCTGAAAAAGAATATCAGTCATTTTCCCTTATATACAACGATAGATCCTTGGATTTGATATGTAAGGACAAAGAGGAGGCTGAGATATGGTTTGTCGGTCTTAAGGCATTAGTTACTCGAGGTAATACCAACAGTCAAACGTGGAAATTCGAACCATGTGAAAGTCCATATCCTGGAAGTCCCCGTGCTGGCACACGCAAATCTGCTCCATCAAGTTCACCATTTGACCCCAGATATACCAATGGAGTTGCTTCAGACAATTCTAATCAAAATAGATGGGTAAAGGCTTTCTCGGAAATTATTTCTTACACTGGAGCTAACAAGAGTTCAATTCAAGTCGAGTTGATTCCAAATTCCACTTTGTCTCCTGGGTCTGTGGATGAATCAAGTAATCGAAACTCTGCATCTGAGGCAGTTCGAGTTAGTTTATCCAGTGTTGTTAGTTCATCTAGCCATGGTTCTTGTCATGAGGATTTTGAGGCCTTAGGTGATGTTTTTATTTGGGGAGAAGGTATTGGTGATGGAATTGTTGGTGGTGGTGTGCGTAGAGTTGGAACCATATCCAATTCTGAGATGGATGCATTCCTCCCTAAGGCTTTGGAATCAAAAGTAGTTCTAGATGTTCATAGTATCAGTTGTGGCCACAAACATGCTGTTCTAGTTACCAAGCAAGGAGAAATATTTAGTTGGGGAGAGGAATCAGGAGGTAGACTTGGACATGGTGTAGAAGTGGATGTTCTTCACCCTAAGCCCATTGAAACTCTTAGCGGCATTAATATAGAATTAGTAGCATGTGGAGAATATCATAGTTGTGCTGTTACGTATTCTGGGGATCTTTATACTTGGGGCGATGGTACTCACAACTCTGGCTTGCTTGGGCATGAAAACAATGTCAGTCACTGGATTCCTAAGAAAGTAGGTGGTAGCTTGGAGGGTTTACATGTATCATATGTGTCCTGTGGCCCATGGCACACAGCTATTGTTACATCAGCTGGACAGTTGTTTACATTTGGGGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCTCAATAGCACAAATATTCCTAGAGAAGTGGAAGCTTTGAAGGGGTTGAGAACAACCAGGGTTTCCTGTGGTGTTTGGCACACTGCTGCAATTGTTGAGGTAACACACAAATCTAAGGAATCTCCTACACACTCTACTATTGGAACACTTTTCACCTGGGGTGATGGAGATAAATTGCAACTTGGACATGTTGGTAGTGAACCTACACTAGTTCCTGAGCGTGTGATTGCATTGGATAATGAAAACATTTGTCGAGTGGCTTGTGGCCACAGTCTTACAATTGCATTGACAACCTCAGGACATGTATATACAATGGGTAGTACAGCTTATGGACAACTTGGCTGTCCTGCAGCTGATGGAAAAGTCCCCACACGTGTTAAAGATCAACTTGCTGACTGTTTTGTGGAAGATATTGCCTGTGGTTCTTATCATGTTGCAGCCCTAACTTCAAAAGCAGAGGTTTATACTTGGGGAAAAGGTTTGAATGGGCAATTAGGTCATGGAGACAATGATCACCGGAATAAACCCACTCTTGTTCAGTTTTTGAAAGACAAGCAAGTGAAAACCGTCGTTTGTGGTTCAAACTTCACTGCTGTTGTGTGTATTCATAAATGGGTATCAAGCACTGACCATTCTCTATGTTCTGGTTGTCGTAATCCATTTGGATTCAGAAGAAAACGTCATAATTGTTACAACTGTGGGCTTGTTTTTTGCAAAGGATGCACAAACAAGAAATCTATAAAAGCTTCCCTTGCTCCAGACTCCAACAAGCCATATCGGGTTTGTGATGATTGTTACTCTAAACTTAAGAAAGCTTCAGAAACAGTTCCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCATGACAACAGTAAGGTCACTAAATTACAGGAAAAGCTATTAAGGCTTTCATCCTTTGGTTCTTTTACTCAATCAGAAAGCAGTCCATCAAAGCCTCCAGAATCACATGATACCCATGTTTTTCCATCTTTGAATGGAAAATTGCATGTGGGGATTTATGGTCCTATAAAATCATCAAATACTCCTTCTCTGGTATCTAAGAAAAACATTTCAGTTTCTGAGCCTGCTGCAAGAATCTCTTGCCAATCAACATCACCGGCTTCTTCAAAGTGTAGCCCACGACAATCTTGTGAAGATAACCATGATGATCCAAAGCTCAAAAATGACATTCTAACTCAAGAAGTCATTGCTTTAAGGGCACAGGTTGAAGAGCTTACTCTTAAGTCGAAAAGTCTAGAGGCTGAACTCGAGCGAACATCACAGCGATTGAAGGAAGTGACAGCAGTAGCTGCAGATGAAGCTGAAAAGTGTAAATCTGCAAAAGAGTTGAAGGAAATGGTGCAAGGACCTCCAGAAGGACATAAAGCAAATGCTGACACCATAGCAACTTCTTATGCTGAAACCACTAATAACATTCGAGATCTATCTTTGGTTGAGAACCATACAACAAACACTATAAAGGAATCCAACAGCAATACAGCAAATAGAACATTATCTAATGGTGCCAAAGCACAAAGTGGAAAGGCAGAGCGGGTGGTGCAGGATGAACCAGGTGTGTACATAACTTTGTCTCCGCTGCCAGGTGGAGGTAATGAACTAAAGCGTGTTCGCTTCAGTCGGAGGCATTTTACAGAAGAAGAAGCTGAGAAGTGGTGGGCTGAAAATGGAGTCAAAATACTGGAGCGGCATAACATAGTTTCTTCATAG 3030 0.4195 MADPQKAGPVERDIEQALTSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFVGLKALVTRGNTNSQTWKFEPCESPYPGSPRAGTRKSAPSSSPFDPRYTNGVASDNSNQNRWVKAFSEIISYTGANKSSIQVELIPNSTLSPGSVDESSNRNSASEAVRVSLSSVVSSSSHGSCHEDFEALGDVFIWGEGIGDGIVGGGVRRVGTISNSEMDAFLPKALESKVVLDVHSISCGHKHAVLVTKQGEIFSWGEESGGRLGHGVEVDVLHPKPIETLSGINIELVACGEYHSCAVTYSGDLYTWGDGTHNSGLLGHENNVSHWIPKKVGGSLEGLHVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDLNSTNIPREVEALKGLRTTRVSCGVWHTAAIVEVTHKSKESPTHSTIGTLFTWGDGDKLQLGHVGSEPTLVPERVIALDNENICRVACGHSLTIALTTSGHVYTMGSTAYGQLGCPAADGKVPTRVKDQLADCFVEDIACGSYHVAALTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVQFLKDKQVKTVVCGSNFTAVVCIHKWVSSTDHSLCSGCRNPFGFRRKRHNCYNCGLVFCKGCTNKKSIKASLAPDSNKPYRVCDDCYSKLKKASETVPLVQTPSLRSVSLHDNSKVTKLQEKLLRLSSFGSFTQSESSPSKPPESHDTHVFPSLNGKLHVGIYGPIKSSNTPSLVSKKNISVSEPAARISCQSTSPASSKCSPRQSCEDNHDDPKLKNDILTQEVIALRAQVEELTLKSKSLEAELERTSQRLKEVTAVAADEAEKCKSAKELKEMVQGPPEGHKANADTIATSYAETTNNIRDLSLVENHTTNTIKESNSNTANRTLSNGAKAQSGKAERVVQDEPGVYITLSPLPGGGNELKRVRFSRRHFTEEEAEKWWAENGVKILERHNIVSS 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05111 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 585 632 IPR000408 -
Arst3g05111 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 415 463 IPR000408 -
Arst3g05111 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 308 356 IPR000408 -
Arst3g05111 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 480 528 IPR000408 -
Arst3g05111 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 359 410 IPR000408 -
Arst3g05111 1009 Pfam Regulator of chromosome condensation (RCC1) repeat 531 580 IPR000408 -
Arst3g05111 1009 CDD FYVE_like_SF 646 698 - -
Arst3g05111 1009 Gene3D - 476 648 IPR009091 -
Arst3g05111 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 246 307 IPR000408 -
Arst3g05111 1009 MobiDBLite consensus disorder prediction 798 815 - -
Arst3g05111 1009 FunFam PH, RCC1 and FYVE domains-containing protein 1 217 468 - -
Arst3g05111 1009 MobiDBLite consensus disorder prediction 929 945 - -
Arst3g05111 1009 Gene3D - 188 471 IPR009091 -
Arst3g05111 1009 CDD PH_PLC_plant-like 12 122 - -
Arst3g05111 1009 MobiDBLite consensus disorder prediction 131 169 - -
Arst3g05111 1009 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Arst3g05111 1009 Coils Coil 829 870 - -
Arst3g05111 1009 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 640 702 IPR017455 -
Arst3g05111 1009 MobiDBLite consensus disorder prediction 148 169 - -
Arst3g05111 1009 Pfam FYVE zinc finger 636 702 IPR000306 GO:0046872
Arst3g05111 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 532 583 IPR000408 -
Arst3g05111 1009 ProSiteProfiles BRX domain profile. 950 1005 IPR013591 -
Arst3g05111 1009 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 453 463 IPR000408 -
Arst3g05111 1009 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 884 - -
Arst3g05111 1009 Gene3D - 13 130 IPR011993 -
Arst3g05111 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 584 635 IPR000408 -
Arst3g05111 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 480 531 IPR000408 -
Arst3g05111 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 308 359 IPR000408 -
Arst3g05111 1009 SUPERFAMILY FYVE/PHD zinc finger 636 711 IPR011011 -
Arst3g05111 1009 MobiDBLite consensus disorder prediction 929 951 - -
Arst3g05111 1009 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 294 304 IPR000408 -
Arst3g05111 1009 SMART fyve_4 632 703 IPR000306 GO:0046872
Arst3g05111 1009 SUPERFAMILY RCC1/BLIP-II 246 637 IPR009091 -
Arst3g05111 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 360 414 IPR000408 -
Arst3g05111 1009 MobiDBLite consensus disorder prediction 798 826 - -
Arst3g05111 1009 SUPERFAMILY PH domain-like 13 121 - -
Arst3g05111 1009 PRINTS Chromosome condensation regulator RCC1 signature 360 376 IPR000408 -
Arst3g05111 1009 PRINTS Chromosome condensation regulator RCC1 signature 579 600 IPR000408 -
Arst3g05111 1009 PRINTS Chromosome condensation regulator RCC1 signature 417 431 IPR000408 -
Arst3g05111 1009 PRINTS Chromosome condensation regulator RCC1 signature 401 417 IPR000408 -
Arst3g05111 1009 PRINTS Chromosome condensation regulator RCC1 signature 521 539 IPR000408 -
Arst3g05111 1009 PRINTS Chromosome condensation regulator RCC1 signature 310 326 IPR000408 -
Arst3g05111 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 708 IPR013083 -
Arst3g05111 1009 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 415 466 IPR000408 -
Arst3g05111 1009 Pfam Transcription factor regulating root and shoot growth via Pin3 950 1004 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05111 Arst-Chr3 126469373 126477383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05111 948 1006 Major Intrinsic Protein MIP AT1G31880 52.542 8.23e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05111 - - lang:109355968 1320.84