Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05084 ATGTTGCAGTTGAAGCTACACTCAATCCCTTCATCACTTTCTTCTTCTTCCAATTCTCTCTGCCTTCAGAACCATTCCTTTCTCTCTCCAAAGTTCCTTCCTTTTTCTTCTGTCACTCCAAAGCCCTTCTCCATCACATGCCGCCACTCCGACCTCTTCGACCAGAAAACCTTCTCCTCCTCCGCACCTTCTTCTTCTTCTTCAGGTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGGAAGGCTGCACTTTCCATCACTCCTAGGCCTCCGGAATTTGCCCCGCTCGATTCAGGGGCATTCAAAATATCTAGGGAAGGTTATGTTCTGCTTCAGTTTGCACCCGCAATTGCTTCGCGCCAGTATGATTGGACTAGAAAGCAGGTGTTCTCTTTATCAGTGGGCGAAATGGGAACTGTGATCAGCCTTGGCGCAAGGGAGTCTTGTGAATTCTTCCATGATCCTATGAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGGTGGATCCTCTTCCAGATGGTTCTGGTCACATGTTTAACCTCAGTGTTCAAAACAGGATTGTGAATGTCGATGAAAACATCTACATCCCTGTCTCAAGAGCAGAGTTAACAGTTTTGAGCTCAATTTTCAATTTTATTATGCCATACCTTCTCGGTTGGCACACCTTTGCGAACTCGATAAAGCCAGAGGATTCGAGAGGAGCGAATAATGCAAACCCTACATATGGAGGAGACTATGAATGGAATAGACTGTGA 780 0.4538 MLQLKLHSIPSSLSSSSNSLCLQNHSFLSPKFLPFSSVTPKPFSITCRHSDLFDQKTFSSSAPSSSSSGGALPPRVYVGHSIYKGKAALSITPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWTRKQVFSLSVGEMGTVISLGARESCEFFHDPMKGKSDEGKVRKVLKVDPLPDGSGHMFNLSVQNRIVNVDENIYIPVSRAELTVLSSIFNFIMPYLLGWHTFANSIKPEDSRGANNANPTYGGDYEWNRL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05084 259 Pfam Whirly transcription factor 82 216 IPR013742 GO:0003697|GO:0006355|GO:0006952
Arst3g05084 259 Gene3D Transcriptional Coactivator Pc4; Chain A 69 246 IPR009044 GO:0003677|GO:0006355
Arst3g05084 259 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 67 242 - -
Arst3g05084 259 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 31 258 IPR013742 GO:0003697|GO:0006355|GO:0006952
Arst3g05084 259 SUPERFAMILY ssDNA-binding transcriptional regulator domain 74 258 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05084 Arst-Chr3 126166342 126168873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05084 4 258 Whirly Transcription Factor Family AT1G14410 62.692 4.62e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Arst3g05084 Whirly 2.7e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05084 K26559 - gmx:100789252 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g05084 3 126166342 126168873 Arst3g05084 3 126166342 126168873 ECH