Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05083 ATGTTGCAGTTGAAGCTACACTCAATCCCTTCATCACTTTCTTCTTCTTCCAATTCTCTCTGCCTTCAGAACCATTCCTTTCTCTCTCCAAAGTTCCTTCCTTTTTCTTCTGTCACTCCAAAGCCCTTCTCCATCACATGCCGCCACTCCGACCTCTTCGACCAGAAAACCTTCTCCTCCTCCGCACCTTCTTCTTCTTCTTCTTCTTCAGGTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGGAAGGCTGCACTTTCCATCACTCCTAGGCCTCCGGAATTTGCCCCGCTCGATTCAGGGGCATTCAAAATATCTAGGGAAGGTTATGTTCTGCTTCAGTTTGCACCCGCAATTGCTTCGCGCCAGTATGATTGGACTAGAAAGCAGGTGTTCTCTTTATCAGTGGGCGAAATGGGAACTGTGATCAGCCTTGGCGCAAGGGAGTCTTGTGAATTCTTCCATGATCCTATGAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGGTGGATCCTCTTCCAGATGGTTCTGGTCACATGTTTAACCTCAGTGTTCAAAACAGGATTGTGAATGTCGATGAAAACATCTACATCCCTGTCTCAAGAGCAGAGTTAACAGTTTTGAGCTCAATTTTCAATTTTATTATGCCATACCTTCTCGGTTGGCACACCTTTGCGAACTCGATAAAGCCAGAGGATTCGAGAGGAGCGAATAATGCAAACCCTACATATGGAGGAGACTATGAATGGAATAGACTGTGA 786 0.4529 MLQLKLHSIPSSLSSSSNSLCLQNHSFLSPKFLPFSSVTPKPFSITCRHSDLFDQKTFSSSAPSSSSSSSGGALPPRVYVGHSIYKGKAALSITPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWTRKQVFSLSVGEMGTVISLGARESCEFFHDPMKGKSDEGKVRKVLKVDPLPDGSGHMFNLSVQNRIVNVDENIYIPVSRAELTVLSSIFNFIMPYLLGWHTFANSIKPEDSRGANNANPTYGGDYEWNRL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05083 261 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 31 260 IPR013742 GO:0003697|GO:0006355|GO:0006952
Arst3g05083 261 SUPERFAMILY ssDNA-binding transcriptional regulator domain 76 260 IPR009044 GO:0003677|GO:0006355
Arst3g05083 261 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 69 244 - -
Arst3g05083 261 Pfam Whirly transcription factor 84 218 IPR013742 GO:0003697|GO:0006355|GO:0006952
Arst3g05083 261 Gene3D Transcriptional Coactivator Pc4; Chain A 71 248 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05083 Arst-Chr3 126166342 126168873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05083 4 260 Whirly Transcription Factor Family AT1G14410 62.595 7.64e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Arst3g05083 Whirly 2.7e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05083 K26559 - gmx:100789252 368.622