Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst3g05082 ATGTTGCAGTTGAAGCTACACTCAATCCCTTCATCACTTTCTTCTTCTTCCAATTCTCTCTGCCTTCAGAACCATTCCTTTCTCTCTCCAAAGTTCCTTCCTTTTTCTTCTGTCACTCCAAAGCCCTTCTCCATCACATGCCGCCACTCCGACCTCTTCGACCAGAAAACCTTCTCCTCCTCCGCACCTTCTTCTTCTTCTTCTTCAGGTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGGAAGGCTGCACTTTCCATCACTCCTAGGCCTCCGGAATTTGCCCCGCTCGATTCAGGGGCATTCAAAATATCTAGGGAAGGTTATGTTCTGCTTCAGTTTGCACCCGCAATTGCTTCGCGCCAGTATGATTGGACTAGAAAGCAGGTGTTCTCTTTATCAGTGGGCGAAATGGGAACTGTGATCAGCCTTGGCGCAAGGGAGTCTTGTGAATTCTTCCATGATCCTATGAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGGTGGATCCTCTTCCAGATGGTTCTGGTCACATGTTTAACCTCAGTGTTCAAAACAGGATTGTGAATGTCGATGAAAACATCTACATCCCTGTCTCAAGAGCAGAGTTAACAGTTTTGAGCTCAATTTTCAATTTTATTATGCCATACCTTCTCGGTTGGCACACCTTTGCGAACTCGATAAAGCCAGAGGATTCGAGAGGAGCGAATAATGCAAACCCTACATATGGAGGAGACTATGAATGGAATAGACTGTGA 783 0.4534 MLQLKLHSIPSSLSSSSNSLCLQNHSFLSPKFLPFSSVTPKPFSITCRHSDLFDQKTFSSSAPSSSSSSGGALPPRVYVGHSIYKGKAALSITPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWTRKQVFSLSVGEMGTVISLGARESCEFFHDPMKGKSDEGKVRKVLKVDPLPDGSGHMFNLSVQNRIVNVDENIYIPVSRAELTVLSSIFNFIMPYLLGWHTFANSIKPEDSRGANNANPTYGGDYEWNRL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst3g05082 260 Pfam Whirly transcription factor 83 217 IPR013742 GO:0003697|GO:0006355|GO:0006952
Arst3g05082 260 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 68 243 - -
Arst3g05082 260 Gene3D Transcriptional Coactivator Pc4; Chain A 70 247 IPR009044 GO:0003677|GO:0006355
Arst3g05082 260 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 31 259 IPR013742 GO:0003697|GO:0006355|GO:0006952
Arst3g05082 260 SUPERFAMILY ssDNA-binding transcriptional regulator domain 75 259 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst3g05082 Arst-Chr3 126166342 126168873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst3g05082 4 259 Whirly Transcription Factor Family AT1G14410 62.452 3.38e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Arst3g05082 Whirly 2.7e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst3g05082 K26559 - gmx:100789252 364.77